PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G036600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 324aa MW: 35800.8 Da PI: 9.596 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 253 | 310 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++prsYY+C+s+ gCp++k+ver+ +dp+++++tYeg+H h+ Manes.02G036600.1.p 253 DDYTWRKYGQKPIKGSPYPRSYYKCSSKrGCPARKHVERCLQDPTMLVVTYEGDHCHS 310 99*************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.7E-14 | 208 | 248 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.2E-32 | 245 | 311 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.747 | 246 | 312 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-26 | 249 | 310 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-35 | 251 | 311 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 253 | 309 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MKETSGVCVS STPRWDFKVH EVAQSSFRQA HRLFCCISDT THKRSIQEVS LIAQGAVNEF 60 RNLLTLLDGP SQSDSKRIRK GPLPLPHDIN PVELMDNSTS MPQSSGCNLT TEPRIVRQLL 120 PLQSIQATNS LSHTTSFSFD RGNSNSKANV DFTNPAMISN LSFSLPSSPF LSLDGRGGIE 180 KQLVQYSASE TGASRDSSSM FPKSKSGTMS EETSTKCLAS TGGCHCSKRR KLRMKKIIQV 240 PALSCKLAEI PPDDYTWRKY GQKPIKGSPY PRSYYKCSSK RGCPARKHVE RCLQDPTMLV 300 VTYEGDHCHS KLLFSSPNLM IQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 247 | 309 | 10 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G036600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603536.1 | 0.0 | probable WRKY transcription factor 15 | ||||
TrEMBL | A0A2C9WAY4 | 0.0 | A0A2C9WAY4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032017m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14424 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 8e-50 | WRKY DNA-binding protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G036600.1.p |