PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G031200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GRF | ||||||||
Protein Properties | Length: 192aa MW: 20990.8 Da PI: 9.3453 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.8 | 5.9e-26 | 116 | 160 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++l+++k+CErH+hrgr+rsrk +e+ Manes.02G031200.1.p 116 DPEPGRCRRTDGKKWRCSKEALPDQKYCERHMHRGRQRSRKLVEA 160 79***************************************9986 PP | |||||||
2 | QLQ | 32.5 | 2.6e-12 | 44 | 78 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ ++ vP +L+++++k Manes.02G031200.1.p 44 FTILQLQELQLQSLIYKYIESGFSVPYHLVLPLWK 78 7888*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51666 | 16.428 | 43 | 78 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.2E-9 | 44 | 77 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.77 | 116 | 160 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.4E-22 | 117 | 159 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MERHGYNGGS AGSPPIGLGL ALGRGGSTDH RPMPIPACTG SYGFTILQLQ ELQLQSLIYK 60 YIESGFSVPY HLVLPLWKSV PSSLSGSNSK LYQPYPSSMG GSNSIPLHLE YKIGMDPEPG 120 RCRRTDGKKW RCSKEALPDQ KYCERHMHRG RQRSRKLVEA NSETLNASTN LSISLPFSND 180 DPSTGEVGLR P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G031200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605677.1 | 1e-137 | uncharacterized protein LOC110610112 | ||||
Swissprot | Q6EPP9 | 2e-38 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A2C9WBZ7 | 1e-137 | A0A2C9WBZ7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027844m | 4e-80 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 6e-29 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G031200.1.p |
Publications ? help Back to Top | |||
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