PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G018700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TALE
Protein Properties Length: 685aa    MW: 75861.1 Da    PI: 6.6893
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G018700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-094474841954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Manes.02G018700.1.p 447 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 484
                          554459******************************88 PP
2BELL1153.8e-37308379172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e++elqk+k+kLls+leeV++rY+ y++q++ v+ssFe+vag g+a++Y +lA+ka+SrhFrcL+d i+ qi
  Manes.02G018700.1.p 308 EFMELQKRKTKLLSMLEEVERRYRYYCDQMKNVVSSFETVAGAGAATVYSALASKAMSRHFRCLRDGIVAQI 379
                          679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.3E-58244377IPR006563POX domain
PfamPF075266.3E-47250375IPR006563POX domain
PROSITE profilePS5007112.179425488IPR001356Homeobox domain
SMARTSM003895.8E-9428492IPR001356Homeobox domain
CDDcd000864.47E-11428489No hitNo description
SuperFamilySSF466896.42E-17429494IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27431494IPR009057Homeodomain-like
PfamPF059209.3E-18445484IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MARKLCEDKS SNMASSSSAG FCYTDVSSSN PTIQTHLGNQ IQGFESNPEI FNLTTGVEMI  60
GFSRNLQQQQ SDSNTTVMWK GFLSKPGNNN TGGGGGGPSS SKTIIESTSD FYQHEFNKQD  120
FTTGISETSN GNLIVGPDSS APWQEHRLLV DDSSLRCVFP CEGNERPSQG LSLSLSSTNP  180
SSIGLQSFEL RHASSHQNHD NPQEEMRFMN SSSRDGFFGK SASNIQQQQM MQEGFLTKAA  240
TLHHQGQFQL RNSRFLGPAQ ELLNEFCCLG TKQTDQLRPK TSKPKQWDDE NGSTSGSSSR  300
KQSLCSLEFM ELQKRKTKLL SMLEEVERRY RYYCDQMKNV VSSFETVAGA GAATVYSALA  360
SKAMSRHFRC LRDGIVAQIH ATKKAMGEKD PAAPGTTRGE TPRLRVLDQA LRQQRAIQQM  420
TMMESHPWRP QRGLPERSVS VLRAWLFEHF LHPYPSDVDK HILARQTGLS RSQVSNWFIN  480
ARVRLWKPMV EEMYLEETKE QDNNVMASSD GVADLEDNND RPHTNPSSTD QKPSLDQLIR  540
IDSECLSSII SNPDKNNDTS KGTKTFQNQH LHLQQQNFGA FGAVELDFSS YNHHTASGVS  600
FANNDHGANQ NFNGGGVSLT LGLQQHGGGG VSLAFSPASQ SSLFYPRDHI DDCPPVQYSL  660
LDGEAQNLPY RNLMGAQLLH DLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15434492563Homeobox protein Meis2
3k2a_B2e-15434492563Homeobox protein Meis2
4xrs_A1e-15434491158Homeobox protein Meis1
4xrs_B1e-15434491158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G018700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604201.10.0homeobox protein BEL1 homolog
RefseqXP_021604202.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-149BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A2C9WA290.0A0A2C9WA29_MANES; Uncharacterized protein
STRINGcassava4.1_002899m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-136TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]