PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G017300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 33166.1 Da PI: 6.6729 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++ + g+ R++k+c++rw +yl Manes.02G017300.1.p 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l+++++ G++ W+ Ia++++ gRt++++k++w+++ Manes.02G017300.1.p 67 RGRFTPEEEKLIINLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.083 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.26E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.816 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PDKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIN LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS 120 ASPTTVAATS RGTEHSSNQI DLMYQDLTTR PQVQETLFST PAPLFMFDTG TSPFDATAHN 180 SVRGELFNDP ASLTAETWNS NQHHHHHQVQ AFPHHQATFS IGIDTNNYLP PLIDNMIPMD 240 EEGDIALKCM QRQELNSNFL FWDNVDEPLG GEEIAAISSS MEASLSSFPS SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G017300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP770011 | 1e-121 | KP770011.1 UNVERIFIED: Populus tomentosa NAC domain transcription factor-like (Potri.003G132000) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021597191.1 | 0.0 | transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 8e-65 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A2C9WA27 | 0.0 | A0A2C9WA27_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030455m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4112 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 4e-93 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G017300.1.p |