PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G016900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 183aa    MW: 20455.2 Da    PI: 9.9142
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G016900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.8e-31103161159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s++ rsYYrCt+++C+vkk+++r ++d ++v++tYeg Hnh+
  Manes.02G016900.1.p 103 LDDGYRWRKYGQKAVKNSTHQRSYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 161
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-3290162IPR003657WRKY domain
SuperFamilySSF1182901.7E-2796162IPR003657WRKY domain
PROSITE profilePS5081127.84198163IPR003657WRKY domain
SMARTSM007748.7E-36103162IPR003657WRKY domain
PfamPF031061.2E-24104161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDNGETTPML TVDDVLKLNP LLPSTSMLPP MATDQLGHDS HLGSDIDWIS LLSGSFELGD  60
QNPSPSKARY GENVGTKKKK GGRTKKATPA RIAFHTRSAD DILDDGYRWR KYGQKAVKNS  120
THQRSYYRCT QHTCNVKKQI QRLSKDSSIV VTTYEGIHNH PSEKVMESLS PLLRQLQFLS  180
RI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-2490160171WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G016900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605748.11e-135probable WRKY transcription factor 43
SwissprotQ8VWQ45e-55WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A2C9WA081e-133A0A2C9WA08_MANES; Uncharacterized protein
STRINGcassava4.1_022257m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-56WRKY DNA-binding protein 56