PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G271600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 306aa    MW: 34604.9 Da    PI: 5.0193
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G271600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.1e-131055146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g+W +eEde l + v+++G ++W++I ++  + Rt+k+c++rw +
  Manes.01G271600.1.p 10 KGPWKAEEDEVLRNHVEKYGARDWSSIRSKGLLQRTGKSCRLRWVN 55
                         79*************************8887799**********87 PP
2Myb_DNA-binding43.95.4e-1466105344
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          +++ eE+   +d+ +q+G++ W++Ia +++ gRt++++k++w
  Manes.01G271600.1.p  66 KFSVEEERVVIDLQTQFGNK-WAKIATYLP-GRTDNDVKNFW 105
                          799*****************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.069561IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-20658IPR009057Homeodomain-like
SuperFamilySSF466895.08E-288105IPR009057Homeodomain-like
SMARTSM007174.2E-10959IPR001005SANT/Myb domain
CDDcd001677.77E-111257No hitNo description
PfamPF139216.6E-121363No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1759111IPR009057Homeodomain-like
PROSITE profilePS5129417.82162113IPR017930Myb domain
SMARTSM007172.0E-1163111IPR001005SANT/Myb domain
PfamPF002494.6E-1166105IPR001005SANT/Myb domain
CDDcd001671.27E-966105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGKRDEIRK GPWKAEEDEV LRNHVEKYGA RDWSSIRSKG LLQRTGKSCR LRWVNKLRPN  60
LKNGCKFSVE EERVVIDLQT QFGNKWAKIA TYLPGRTDND VKNFWSSRQK RLARILQTSA  120
TPSSSSSSNS KPRKPKKQVP LLDVPTLQAP LFNFSMEEES SAKAQSWSTS YIETPEPISM  180
VPVQFHIDIV NNELSSYDAN LVLVECQKED QDPFPQISEY QPDLTFSPES QELLARLEDP  240
ELFNVFGAVD APELEPQLSL GLPLFDPIPS CMNGAREGRN PASRSTFFDD FPSDVFDNIV  300
PLPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-26711124126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G271600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:25057814}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2028711e-113KP202871.1 Jatropha curcas MYB125 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021591786.10.0transcription factor DUO1-like
SwissprotA0A178VEK71e-87DUO1_ARATH; Transcription factor DUO1
TrEMBLA0A2C9WPZ10.0A0A2C9WPZ1_MANES; Uncharacterized protein
STRINGcassava4.1_021857m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-89MYB family protein
Publications ? help Back to Top
  1. Zheng B,He H,Zheng Y,Wu W,McCormick S
    An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana.
    PLoS Genet., 2014. 10(7): p. e1004421
    [PMID:25057814]
  2. Peters B, et al.
    A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter.
    Plant Physiol., 2017. 173(1): p. 280-293
    [PMID:27624837]
  3. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]