PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G270700.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

SBP

Protein Properties

Length: 308aa MW: 34284 Da PI: 8.8769

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G270700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	5.8e-41	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl qrfCqqCsrfh lsefD++krsCrrrLa+hn+rrrk+++ Manes.01G270700.2.p 154 RCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVIAAGLAQRFCQQCSRFHLLSEFDNGKRSCRRRLADHNRRRRKSHQ 231 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.4E-35	148	216	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.565	152	229	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.84E-38	153	230	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.0E-31	155	228	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MLEYEWGSPS TMMLLSGDEP TEGPAQNRQI FDHYAAQSFN DNLVPQPTTN LFHHPPIHQV 60 NSLYDPRAYA IASSYTPPHP SLLSLDPITN PAGAAPSYFL VPKSEEVSRP SDYTARIGLN 120 LGGRTYFSSA EDDFVNRLYR RCRQVEAGSS NAPRCQAEGC NADLSHAKHY HRRHKVCEFH 180 SKASTVIAAG LAQRFCQQCS RFHLLSEFDN GKRSCRRRLA DHNRRRRKSH QINQETHKLQ 240 PAESARNYSS ENLTRSPPES GVHNSSSSVT VAVSPPRKFL DCFRHIPYQA TASSSSASSS 300 SLFFSSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-32	147	228	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G270700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614671.1	0.0	squamosa promoter-binding-like protein 8 isoform X2
Swissprot	Q8GXL3	2e-76	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A251LW85	0.0	A0A251LW85_MANES; Uncharacterized protein
STRING	cassava4.1_012466m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-67	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Manes.01G270700.2.p

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]