PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G259600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 658aa    MW: 74098.3 Da    PI: 8.1148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G259600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-16366413148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEde lv ++k+ G g+W++ ++  g+ R++k+c++rw +yl
  Manes.01G259600.1.p 366 KGPWTPEEDETLVSYIKKNGYGSWRSLPKLAGLLRCGKSCRLRWTNYL 413
                          79******************************99************97 PP
2Myb_DNA-binding46.67.8e-15419464148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Manes.01G259600.1.p 419 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 464
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.12E-62102314IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.3E-73102316IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5119510.097112140IPR014014RNA helicase, DEAD-box type, Q motif
CDDcd002681.31E-98114314No hitNo description
SMARTSM004878.2E-58131327IPR014001Helicase superfamily 1/2, ATP-binding domain
PfamPF002701.0E-44137301IPR011545DEAD/DEAH box helicase domain
PROSITE profilePS5119230.069143313IPR014001Helicase superfamily 1/2, ATP-binding domain
PROSITE patternPS000390259267IPR000629ATP-dependent RNA helicase DEAD-box, conserved site
Gene3DG3DSA:1.10.10.601.9E-23357416IPR009057Homeodomain-like
PROSITE profilePS5129417.565361413IPR017930Myb domain
SuperFamilySSF466895.87E-30363460IPR009057Homeodomain-like
SMARTSM007176.1E-12365415IPR001005SANT/Myb domain
PfamPF002496.4E-15366413IPR001005SANT/Myb domain
CDDcd001676.64E-10368413No hitNo description
PROSITE profilePS5129424.539414468IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-25417468IPR009057Homeodomain-like
SMARTSM007173.0E-14418466IPR001005SANT/Myb domain
PfamPF002491.1E-13419464IPR001005SANT/Myb domain
CDDcd001672.74E-10421464No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MNNYNRGRYT PGIGAGRGAG MNANPSFQSR VPQQQYVQRN SMQNHQQFQQ QQQQQWLRRT  60
QLPPADSSVD EVEKTVQSEA VDSSSQDWKA RLKIPPPDTR YKTEDVTATK GNEFEDYFLK  120
RELLMGIYEK GFERPSPIQE ESIPIALTGS DILARAKNGT GKTAAFCIPA LEKIDQDNNF  180
IQVVILVPTR ELALQTSQVC KELGKHLKIQ VMVTTGGTSL KDDIMRLYQP VHLLVGTPGR  240
ILDLAKKGVC VLKDCSMLVM DEADKLLSPE FQPSIEQLIR FLPPNRQILM FSATFPVTVK  300
DFKDRYLQKP YIINLMDELT LKGITQYYAF VEERQKVHCL NTLFSKLQIK EKMGRTPCCD  360
KKGLKKGPWT PEEDETLVSY IKKNGYGSWR SLPKLAGLLR CGKSCRLRWT NYLRPDIKRG  420
PFTLEEEKLV IQLHGILGNR WAAIASQLPG RTDNEIKNLW NTHLKKRLLC MGLDPQTHEP  480
FTSCGPTIKA PASPATRHMA QWESARLEAE ARLSRESSLF NRPTPGKTDS DYFLRMWNSE  540
VGESFRKFNQ EDKTTCQSPA SASQASSSTK CCSFSAVTAD ISPNLAGYST TASNQNEDME  600
CKSCKSYNAG SDSSSSIELE DSSDSTLQLL LDFPINNDMS FLEENVDSFT TYSAMQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1s2m_A1e-125983537262Putative ATP-dependent RNA helicase DHH1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G259600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613368.10.0DEAD-box ATP-dependent RNA helicase 8-like
SwissprotQ8RXK60.0RH8_ARATH; DEAD-box ATP-dependent RNA helicase 8
TrEMBLA0A2C9WP560.0A0A2C9WP56_MANES; Uncharacterized protein
STRINGcassava4.1_006468m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-116myb domain protein 17
Publications ? help Back to Top
  1. Lal SK,Giroux MJ,Brendel V,Vallejos CE,Hannah LC
    The maize genome contains a helitron insertion.
    Plant Cell, 2003. 15(2): p. 381-91
    [PMID:12566579]
  2. Tamaoki M, et al.
    Transcriptome analysis of O3-exposed Arabidopsis reveals that multiple signal pathways act mutually antagonistically to induce gene expression.
    Plant Mol. Biol., 2003. 53(4): p. 443-56
    [PMID:15010611]
  3. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]
  4. Mingam A, et al.
    DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes.
    Plant Biotechnol. J., 2004. 2(5): p. 401-15
    [PMID:17168887]
  5. Huang TS,Wei T,Laliberté JF,Wang A
    A host RNA helicase-like protein, AtRH8, interacts with the potyviral genome-linked protein, VPg, associates with the virus accumulation complex, and is essential for infection.
    Plant Physiol., 2010. 152(1): p. 255-66
    [PMID:19880609]
  6. Xu R,Zhang S,Huang J,Zheng C
    Genome-wide comparative in silico analysis of the RNA helicase gene family in Zea mays and Glycine max: a comparison with Arabidopsis and Oryza sativa.
    PLoS ONE, 2013. 8(11): p. e78982
    [PMID:24265739]
  7. Baek W,Lim CW,Lee SC
    A DEAD-box RNA helicase, RH8, is critical for regulation of ABA signalling and the drought stress response via inhibition of PP2CA activity.
    Plant Cell Environ., 2018. 41(7): p. 1593-1604
    [PMID:29574779]
  8. Aubourg S,Kreis M,Lecharny A
    The DEAD box RNA helicase family in Arabidopsis thaliana.
    Nucleic Acids Res., 1999. 27(2): p. 628-36
    [PMID:9862990]