PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G252400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 328aa MW: 35721.3 Da PI: 6.1783 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 3e-31 | 145 | 203 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+geHnh+ Manes.01G252400.1.p 145 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTGEHNHP 203 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-31 | 138 | 205 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.255 | 139 | 205 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-27 | 142 | 205 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-38 | 144 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-26 | 146 | 203 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDDDWDLHAV VRSCTSSSSS IAATTTCPSS FTRADFCFSS SSFASEQAGP LFSAPDPFET 60 RNAIGELHEL YKPFFPKSHQ AIFSPKPASI FSLADSNKEQ TQIKQPKQSH ALSVSSTANS 120 HTPRSKRRKN QLKKICQVPA ESLSSDVWAW RKYGQKPIKG SPYPRGYYRC SSSKGCLARK 180 QVERNRSDPG MFIVTYTGEH NHPAPTHRNS LAGSTRQKAP TPQIVTTGDS DKPSSPAQPT 240 CLSPATSMDD ELLPQSTNTE SREEKDTMED DEEDEFSGFS DMAVSDDFFA GLEELANPVT 300 GDHFSDHPVN FGLPWVANNA ATAAGGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-22 | 129 | 206 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-22 | 129 | 206 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G252400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827605 | 0.0 | KT827605.1 Manihot esculenta WRKY transcription factor 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618466.1 | 0.0 | WRKY transcription factor 22 | ||||
Swissprot | O04609 | 1e-91 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A140H8N4 | 0.0 | A0A140H8N4_MANES; WRKY transcription factor 30 | ||||
STRING | cassava4.1_024248m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 3e-84 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G252400.1.p |