PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G225200.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 743aa MW: 84340.2 Da PI: 6.7319

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G225200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	44	137	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ Hn Manes.01G225200.2.p 44 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKASDDGKMQRNRKSSRCGCQAYMRIVKKAdfdVPEWRITGFSNIHN 133 6*************999887455667****************9***************98877677789******* PP FAR1 87 Hela 90 Hel Manes.01G225200.2.p 134 HELL 137 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-17	44	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-24	260	351	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.409	523	571	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-7	544	569	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-6	546	573	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MDSCADDIGT VEEIAEDTIL SRQTSVNLVP FIGQRFVSQD AAYEFYCSFA KQCGFSIRRH 60 RTRGKDGVGR GITRRDFTCH RGGYPQIKAS DDGKMQRNRK SSRCGCQAYM RIVKKADFDV 120 PEWRITGFSN IHNHELLKSN EVQLLPAHST MSADDKSRIC MYAKAGMSVR QMLRLMELEK 180 GVKLGCLPFT EMDVRNLLQS FRNVNRDNDA INLLQMCKYK KDKDPNFKYN FQIDANNRLE 240 RIAWSYALSI QSYEAFGDAV IFDTTHRLDA YDMIMGIWIG VDNHGSNCFF GCVLLRDENM 300 ESFSWALKTF LEFVDGKAPE TILTDQNIWL KEAVAVEMPR TKHAFCIWHI IAKFSDWFSI 360 LLGSQYDKWK AEFHRLYNLQ SVEDFEVGWG EMVDTYGLHG NKHIVSLYAL RTFWALPFLR 420 CYFFAGMTST FQSDSINAFI QRILSAQSLD NFVEKVAVAV GYKEDAGPKQ KVPRKVHKIS 480 LKTGSPIESH AATVLTPYAF GKLQEELVLA PQYASLMVDE SYFIVRHHID MDGGCKVLWI 540 PHDEFISCSC HLFEFSGILC RHVLRVLSTN NCFHIPDRYL PVRWRDVGTS LTKPFPAFTS 600 DEHAGKVQLL QSMVSTLIAE SMGTEERLDV ACDQVAHVLS SIKEFPGPAH DDNDITYTSP 660 SDSLILPEVE DSVGFVQSFA AGSTHDPMTL GKMKERRLRD GININRKRRR CSLPCCGQFG 720 HDATDCPMMG SDDLNEDGLG FI*

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MDSCADDIGT VEEIAEDTIL SRQTSVNLVP FIGQRFVSQD AAYEFYCSFA KQCGFSIRRH  60
RTRGKDGVGR GITRRDFTCH RGGYPQIKAS DDGKMQRNRK SSRCGCQAYM RIVKKADFDV  120
PEWRITGFSN IHNHELLKSN EVQLLPAHST MSADDKSRIC MYAKAGMSVR QMLRLMELEK  180
GVKLGCLPFT EMDVRNLLQS FRNVNRDNDA INLLQMCKYK KDKDPNFKYN FQIDANNRLE  240
RIAWSYALSI QSYEAFGDAV IFDTTHRLDA YDMIMGIWIG VDNHGSNCFF GCVLLRDENM  300
ESFSWALKTF LEFVDGKAPE TILTDQNIWL KEAVAVEMPR TKHAFCIWHI IAKFSDWFSI  360
LLGSQYDKWK AEFHRLYNLQ SVEDFEVGWG EMVDTYGLHG NKHIVSLYAL RTFWALPFLR  420
CYFFAGMTST FQSDSINAFI QRILSAQSLD NFVEKVAVAV GYKEDAGPKQ KVPRKVHKIS  480
LKTGSPIESH AATVLTPYAF GKLQEELVLA PQYASLMVDE SYFIVRHHID MDGGCKVLWI  540
PHDEFISCSC HLFEFSGILC RHVLRVLSTN NCFHIPDRYL PVRWRDVGTS LTKPFPAFTS  600
DEHAGKVQLL QSMVSTLIAE SMGTEERLDV ACDQVAHVLS SIKEFPGPAH DDNDITYTSP  660
SDSLILPEVE DSVGFVQSFA AGSTHDPMTL GKMKERRLRD GININRKRRR CSLPCCGQFG  720
HDATDCPMMG SDDLNEDGLG FI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	705	709	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G225200.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609593.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2C9WPN2	0.0	A0A2C9WPN2_MANES; Uncharacterized protein
STRING	cassava4.1_002350m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Manes.01G225200.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]