PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G199200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 180aa    MW: 20313 Da    PI: 5.6521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G199200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00022850123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C  C++ F++   L  H++ H
  Manes.01G199200.1.p 28 YECVFCKRGFNTAQALGGHMNIH 50
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-62654No hitNo description
Gene3DG3DSA:3.30.160.608.0E-42654IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-52852IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8452855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEPHLHDGGE TDRSEQANDD DAGTGRSYEC VFCKRGFNTA QALGGHMNIH RKDRAKPRPS  60
SVPSISSRVD DDYYASLRGY PPIQSYPPHY STAHHHPHNE VLINYQTFFP SASTWGFRSP  120
HGDDLYAHTP QLLNSFEEDW RRNLNLQIAP SHVDDNKGKT EDCSESDELD LELRLGHDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G199200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632292.11e-133transcriptional regulator SUPERMAN-like
TrEMBLA0A2C9WMU31e-131A0A2C9WMU3_MANES; Uncharacterized protein
STRINGcassava4.1_017371m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-13C2H2 family protein