PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G187000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 393aa MW: 42214.9 Da PI: 9.7512

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G187000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.9	6.1e-41	51	170	2	112
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Manes.01G187000.1.p 51 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISAShh 140 789******************************************************************999866666666664444433 PP TCP 89 ......kaaksaakskksqksaasalnlak 112 + + +a+++ +++++ +++l + Manes.01G187000.1.p 141 lrntyfNPNFAAHQQLRTRNEWEKNLVFEG 170 444555444444444444444443444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.6E-40	55	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.582	57	111	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MIMDPENGIR SSRPNFPLQL LEKKQHQHPQ PPPPPEHQPS SSSSNPTKKP PPKRTSTKDR 60 HTKVEGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN 120 FTSLNISLRS SGSSISASHH LRNTYFNPNF AAHQQLRTRN EWEKNLVFEG ASTASQQHRR 180 ILFPLEDSLS FSSISSTNNA GGTLNTSVVL QGSPANKQEV RGGGDTSCLD VAVGETSLGR 240 KRRPEHELGH QMGNYLLQST SAGAIPATHS SIPSTFWMVS NPSNSQVING DPMATFPSFN 300 ASPNMYRGSM SGGLHFMNFP APMALLHGQQ LGSTMSGGGN SSGNNFVTES HLGMLAALNT 360 YRPIMGSGSA SESLASRSNP HQGEEDGQDT TS*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MIMDPENGIR SSRPNFPLQL LEKKQHQHPQ PPPPPEHQPS SSSSNPTKKP PPKRTSTKDR  60
HTKVEGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN  120
FTSLNISLRS SGSSISASHH LRNTYFNPNF AAHQQLRTRN EWEKNLVFEG ASTASQQHRR  180
ILFPLEDSLS FSSISSTNNA GGTLNTSVVL QGSPANKQEV RGGGDTSCLD VAVGETSLGR  240
KRRPEHELGH QMGNYLLQST SAGAIPATHS SIPSTFWMVS NPSNSQVING DPMATFPSFN  300
ASPNMYRGSM SGGLHFMNFP APMALLHGQQ LGSTMSGGGN SSGNNFVTES HLGMLAALNT  360
YRPIMGSGSA SESLASRSNP HQGEEDGQDT TS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G187000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021616074.1	0.0	transcription factor TCP15-like
TrEMBL	A0A2C9WNG3	0.0	A0A2C9WNG3_MANES; Uncharacterized protein
STRING	cassava4.1_024212m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.01G187000.1.p