PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G185600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 316aa    MW: 34908.7 Da    PI: 7.8862
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G185600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.3e-3252109258
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                          ++v YkeClkNhAa+lGg a+DGCgEfmp++++   ++++lkCaACgCHRnFHRr + 
  Manes.01G185600.1.p  52 AAVSYKECLKNHAAALGGLALDGCGEFMPTPTDAtPDPTSLKCAACGCHRNFHRRYPY 109
                          5799**************************9988789******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.7E-2754107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-954115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-2956106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.24156107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-26176248IPR009057Homeodomain-like
SuperFamilySSF466892.09E-15177248IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-25186244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDLTPSKSHE SDTDTETPLQ THLSRALSLS NGSFNPSHHY HTTNTRPSPL QAAVSYKECL  60
KNHAAALGGL ALDGCGEFMP TPTDATPDPT SLKCAACGCH RNFHRRYPYT HLPPPPTAAL  120
HWTSSPSPGH TSSGPSPSPN SPVSPTPQQS VYPSAPHMLL ALSTGHSGLF DENHHQSLTV  180
MNPHGRKRAR TKFTEEQKQK MLVFAEKLGW KMLRGNEEKM VDEFCNEVGV KRNVFKVWMH  240
NNKQRKEKGN NHRTCDINKS IVNDNEDRVG FGTFDCNSND INNTKYDNFT TRYQIENKVH  300
DVHGGGSPDE SSPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-171872431873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G185600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597347.10.0zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-58ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A2C9WM370.0A0A2C9WM37_MANES; Uncharacterized protein
STRINGcassava4.1_015131m1e-179(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-38zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]