PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G179900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-other
Protein Properties Length: 548aa    MW: 61055.7 Da    PI: 9.4054
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G179900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-184498357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         kR   t+ q+ +Le+++++++yp++e++ eLA+++gLte+q++ WF+ rR k+k+
  Manes.01G179900.1.p 44 KRILKTPAQIIALEKFYNEHNYPTEEMKSELAEQIGLTEKQISSWFCHRRLKDKR 98
                         78899************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-222698IPR009057Homeodomain-like
SuperFamilySSF466897.27E-1828101IPR009057Homeodomain-like
PROSITE profilePS5007116.7143999IPR001356Homeobox domain
SMARTSM003893.2E-1941103IPR001356Homeobox domain
PfamPF000465.0E-164498IPR001356Homeobox domain
CDDcd000864.59E-174498No hitNo description
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MKFILYMVLT VNHLNPFKEL GTGALDSSEV HSEENRVSPE KNTKRILKTP AQIIALEKFY  60
NEHNYPTEEM KSELAEQIGL TEKQISSWFC HRRLKDKRLS KDETFANGRQ DRSSGTIQDR  120
GSGLRQDSCG STKQGDYRKV DPKEVESQRL SGHNLPAADV TYDRTSRYTG NVNGMDDTSS  180
ESSSSLQDKL FSQSEDPHDM NNSGYLAQNG ASKPLIPKGA NKMGYKPSGY LKVKGEIENA  240
AITAVKKQLG KYYREDGPPL GVEFQPLPPG AFSSSSRDPM NAAAFYVGDL ARIHSPDVSG  300
VRKQSNISSR FEVYGSKMSS QDSYMEGPNC DLKNSSDSRE KKSHHQLKRK VTSYNYSSSI  360
PGGKSALDKY GDLAAETSSH SSKRNYKLSS MHGVEGTRPD TVSNHHHPDG TKAISEQADP  420
WLHDYDNSSP NIVQKKDYKS KPSNLIPGFS KSLDTQERVL STMSEKEKHR EMKGAKEYRD  480
PVRVRMHPTN EMTISKRHGA NFSQQQHVTK AAFPKIPRKT NSNKGFAMER PSSFSEDETA  540
EPSSSVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G179900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634556.10.0homeobox-DDT domain protein RLT1, partial
TrEMBLA0A2C9WPG30.0A0A2C9WPG3_MANES; Uncharacterized protein
STRINGcassava4.1_006913m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.11e-100HB-other family protein