PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G176000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 24336 Da PI: 10.5823 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 117 | 138 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk+F + +L H+r H Manes.01G176000.1.p 117 TCCLCGKTFLSMNSLFGHMRFH 138 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 6.5 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.2E-8 | 48 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.15E-7 | 49 | 70 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.15E-7 | 112 | 138 | No hit | No description |
SMART | SM00355 | 0.67 | 116 | 138 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.66 | 116 | 143 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 0.0012 | 117 | 138 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 118 | 138 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGDSASKISK LCIKIKIPNT PTSGTAKKPV GEGGSGSTDV QRQPTGYRVC EFCGKIFSSG 60 KAWGGHKRHH LKIMKNNNGK RTQQVSHIKM KKQMHGGSNR CNTIKAGDVM ITGGKPTCCL 120 CGKTFLSMNS LFGHMRFHPD RDWKGIRPPS APLPSSPKNQ ISSASEMGAY SSIDLLDSLS 180 SSGSWQKKGK RGICAADLIA EAARSLLRLS RDVGLSTQPA YVDLET |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G176000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021592599.1 | 1e-167 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A2C9WLT9 | 1e-166 | A0A2C9WLT9_MANES; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_022792m | 1e-167 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 1e-21 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G176000.1.p |