PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G171700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 655aa MW: 74099.8 Da PI: 6.0302

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G171700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	44.1	3.5e-14	323	377	3	57
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 +lL++cA+av+ +d++ a++lL ++ +++s +gd +qRla yf +AL++rla++ Manes.01G171700.1.p 323 TLLVQCAQAVAISDQRTATELLRQIGQHSSAYGDGNQRLAYYFSKALETRLAGTR 377 68*************************************************9943 PP
2	GRAS	256.8	8.1e-79	393	650	118	374
GRAS 118 disqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205 di + QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+nv +a+++e++++ +L+++++E+++Vn Manes.01G171700.1.p 393 DILKAYQWPCLIQRLSQRPGGPPKLRITGIELPQPGfrPAERVEETGRRLQRYCERFNVPFEYNV-IAQKWETIKYADLNISRDEMTVVN 481 79999****************************9************************9.7******************* PP GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + ++l +l+d++v +s+rd+vLkl+++++P+++++ + +n++ F++rf eal ++s++fd++++++p e+e+r +E+e++gr+i+ Manes.01G171700.1.p 482 CLYRLRNLPDDTVVANSARDAVLKLIRKIKPDLFIHGVVNGTYNAPFFVTRFREALFHFSSMFDMFDVNVPCEDEQRLLYEKEIFGRDIM 571 ************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 n++aceg+er+er et+++W+ r ++aGF+++ l++++ k++++ +r + + + v+e+ ++++gWk+r ++++S+W+ Manes.01G171700.1.p 572 NAIACEGTERVERPETYKQWQIRNMRAGFRQLLLDQEILKKVRSTVRSEYHKDFVVDEDGRWMLQGWKGRVIYALSVWK 650 ********************************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.2E-11	323	377	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	39.264	393	630	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-76	393	650	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MDTLIQEFPN SMNRFKFDHY PVSFSPNRNL LNGYELNNNL SNPYSPIPSF DSQPAPNDLT 60 SSSYSSLSSE GHDPNNNVVL KYISDMLMEE DLEGKTCMLQ DCLALQAAEK SLYDVLGQEY 120 PHSFDHCSHN AESPNDPSTW SSSVDSSNSY PAAVNSSVEN PKWSFDHVGL DSYGIQSSPM 180 DSPESNTLLG PDFHFEINPL TVVRQGIGDG DYLLASKSNP ATERESSPSS ARGRKNHQRE 240 GGDYLEEERS SKHSAISLAE SEQSEMFDKV LLCPSENNKS EACAQHEKPQ NGASRNGLVK 300 GSNGRTTRGR RQGNKGEVVD LPTLLVQCAQ AVAISDQRTA TELLRQIGQH SSAYGDGNQR 360 LAYYFSKALE TRLAGTRTPK YTPHVGNNPP VSDILKAYQW PCLIQRLSQR PGGPPKLRIT 420 GIELPQPGFR PAERVEETGR RLQRYCERFN VPFEYNVIAQ KWETIKYADL NISRDEMTVV 480 NCLYRLRNLP DDTVVANSAR DAVLKLIRKI KPDLFIHGVV NGTYNAPFFV TRFREALFHF 540 SSMFDMFDVN VPCEDEQRLL YEKEIFGRDI MNAIACEGTE RVERPETYKQ WQIRNMRAGF 600 RQLLLDQEIL KKVRSTVRSE YHKDFVVDED GRWMLQGWKG RVIYALSVWK PVQE*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MDTLIQEFPN SMNRFKFDHY PVSFSPNRNL LNGYELNNNL SNPYSPIPSF DSQPAPNDLT  60
SSSYSSLSSE GHDPNNNVVL KYISDMLMEE DLEGKTCMLQ DCLALQAAEK SLYDVLGQEY  120
PHSFDHCSHN AESPNDPSTW SSSVDSSNSY PAAVNSSVEN PKWSFDHVGL DSYGIQSSPM  180
DSPESNTLLG PDFHFEINPL TVVRQGIGDG DYLLASKSNP ATERESSPSS ARGRKNHQRE  240
GGDYLEEERS SKHSAISLAE SEQSEMFDKV LLCPSENNKS EACAQHEKPQ NGASRNGLVK  300
GSNGRTTRGR RQGNKGEVVD LPTLLVQCAQ AVAISDQRTA TELLRQIGQH SSAYGDGNQR  360
LAYYFSKALE TRLAGTRTPK YTPHVGNNPP VSDILKAYQW PCLIQRLSQR PGGPPKLRIT  420
GIELPQPGFR PAERVEETGR RLQRYCERFN VPFEYNVIAQ KWETIKYADL NISRDEMTVV  480
NCLYRLRNLP DDTVVANSAR DAVLKLIRKI KPDLFIHGVV NGTYNAPFFV TRFREALFHF  540
SSMFDMFDVN VPCEDEQRLL YEKEIFGRDI MNAIACEGTE RVERPETYKQ WQIRNMRAGF  600
RQLLLDQEIL KKVRSTVRSE YHKDFVVDED GRWMLQGWKG RVIYALSVWK PVQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-30	327	651	24	379	Protein SCARECROW
5b3h_D	1e-30	327	651	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G171700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021622598.1	0.0	scarecrow-like protein 14
TrEMBL	A0A2C9WMV3	0.0	A0A2C9WMV3_MANES; Uncharacterized protein
STRING	cassava4.1_003253m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-171	GRAS family protein

Link Out ? help Back to Top
Phytozome	Manes.01G171700.1.p