PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G164800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 34089.3 Da PI: 10.099 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 2.8e-08 | 28 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ E +++ +a + + ++ +W+++a++++ g+t +++ ++ Manes.01G164800.1.p 28 KWTPAENKIFENALAVYDKDtpdRWHRVAAMLP-GKTVGDVIKQYRE 73 8********************************.******9999986 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 8e-15 | 134 | 178 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + +Rt+ q+ s+ qky Manes.01G164800.1.p 134 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVVTRTPTQVASHAQKY 178 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 23 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.788 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 2.5E-9 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-10 | 27 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-7 | 28 | 74 | No hit | No description |
Pfam | PF00249 | 1.2E-6 | 28 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.317 | 127 | 183 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.21E-17 | 129 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-18 | 130 | 182 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.8E-13 | 131 | 181 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 131 | 178 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-12 | 134 | 178 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.89E-11 | 134 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MKWEMALLSP ASHHSSTNWL IDESKSTKWT PAENKIFENA LAVYDKDTPD RWHRVAAMLP 60 GKTVGDVIKQ YRELEVDVSN IEAGLIPIPG YRTSPFTLDW ATSNTCDGFR PSYSLGGKRS 120 SGRPADQERK KGVPWTEEEH KLFLMGLKKY GRGDWRNISR NFVVTRTPTQ VASHAQKYFI 180 RQLSGGKDKR RASIHDITTV NLNDVRTPSP DNKRSPPSPD QPNTVLSQHA NAVGLPRTHF 240 QWNQPNSGGT MAFGASNGNM LLSSPYGINS YGLKMQAQNL HRESYISPQS LAFPMQSAQH 300 YPHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-17 | 29 | 94 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G164800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614855.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-138 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2C9WNP7 | 0.0 | A0A2C9WNP7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012770m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-110 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G164800.1.p |
Publications ? help Back to Top | |||
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