PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G147500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27109.9 Da PI: 8.8654 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+lv +++ +G g+W+t ++ g+ R++k+c++rw +yl Manes.01G147500.1.p 14 KGAWTREEDERLVAYIQAHGQGSWRTLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.1e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eEdel+++++ +lG++ W++Ia +++ gRt++++k++w++++ Manes.01G147500.1.p 67 RGNFTVEEDELIIELHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTHM 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.516 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.91E-31 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.22E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.819 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.54E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRSPCCEKA QINKGAWTRE EDERLVAYIQ AHGQGSWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDVKRGNF TVEEDELIIE LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HMRRKLLSRG 120 IDPSNHRSTS ELYVDSMSNS LGAVLKEENI AGGFRYKHQK NPYERKCQEL NLDLKICPPF 180 QHQSEPLNRE VLCFYCRLGL QKSKKCSCSD DLLHMKNGDG GETYSRELGY CLQGSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-31 | 11 | 116 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G147500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623690.1 | 1e-176 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-101 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2C9WKR8 | 1e-175 | A0A2C9WKR8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024982m | 1e-159 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-88 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G147500.1.p |
Publications ? help Back to Top | |||
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