PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G145900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 328aa    MW: 36221 Da    PI: 6.188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G145900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-1052101154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  Manes.01G145900.1.p  52 RKVQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTIQVLKDL 101
                          5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.12951101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1352122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-752101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-852106No hitNo description
Gene3DG3DSA:4.10.280.106.8E-1152123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-757107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDQWKTTTND FSQSVTADVA PSTSTHTLPP SNSIPDHRQR LEPEVKDPIA ARKVQKADRE  60
KLRRDRLNEH FLELGNTLDP DRPKNDKATI LTDTIQVLKD LTAEVSRLRA DYAALSEESH  120
ELMQEKNELR EEKASLKSDI ENLNSQYQQR VRVMFPWPAV DPSVVMAPTY PYPVPVHVPP  180
GPIPMHPSMQ PFPFFGNQNP NAIPSPCSTF IPYPATANPA NEQPSVQYAS TSHISSKLDS  240
KSKSADHPRG SNSERCDDSD DVATELELKM PGSSSQQDMS TGERKGKHSH RKEKNITNGS  300
SSSRNSSPLG IQDSSSNSVG DVPKSTD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G145900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595059.10.0transcription factor bHLH121-like
SwissprotQ9LT232e-83BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2C9WM470.0A0A2C9WM47_MANES; Uncharacterized protein
STRINGcassava4.1_011554m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-73bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]