PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G145500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WOX
Protein Properties Length: 289aa    MW: 32355.3 Da    PI: 5.4046
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G145500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.66e-203495257
                         T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Manes.01G145500.1.p 34 STRWTPTTDQIRILKDLYYNsgVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 95
                         58*****************8789*************************************97 PP
2Wus_type_Homeobox114.74.5e-373397265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++tRWtPt++Qi+iL++ly+ sG+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Manes.01G145500.1.p 33 SSTRWTPTTDQIRILKDLYYnSGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 97
                         789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-1129100IPR009057Homeodomain-like
PROSITE profilePS5007110.5113096IPR001356Homeobox domain
SMARTSM003895.6E-532100IPR001356Homeobox domain
PfamPF000462.3E-173595IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-73595IPR009057Homeodomain-like
CDDcd000861.16E-63597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEPQQQQQQQ QNQQQPNDDN SSGAKGNFLC RQSSTRWTPT TDQIRILKDL YYNSGVRSPS  60
AEQIQRISAR LRQYGKIEGK NVFYWFQNHK ARERQKKRFT TDVPMQQRTV SNASSWKPED  120
YSFHNKYPNI APGFSSASPS SAAGLPVGQM GNYGYGSVTM EKSFRDCSIS ATANGGVGGS  180
MSPNCGWVGI DPYCSSYSLF DKQKSTNETL EDEEQDQDQE EEATPGIETL PLFPTQREDI  240
NGFCNMKHHP ICYSENYCYG SDDGNNASRT SLELSLNSYS NGQARDSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G145500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2320638e-93FJ232063.1 Populus tomentosa wuschel 1 mRNA, complete cds.
GenBankKR4934048e-93KR493404.1 Populus tomentosa genotype 21 Wuschela gene, complete cds.
GenBankKR4934058e-93KR493405.1 Populus tomentosa genotype 22 Wuschela gene, complete cds.
GenBankKR4934068e-93KR493406.1 Populus tomentosa genotype 23 Wuschela gene, complete cds.
GenBankKR4934078e-93KR493407.1 Populus tomentosa genotype 24 Wuschela gene, complete cds.
GenBankKR4934088e-93KR493408.1 Populus tomentosa genotype 25 Wuschela gene, complete cds.
GenBankKR4934098e-93KR493409.1 Populus tomentosa genotype 26 Wuschela gene, complete cds.
GenBankKR4934108e-93KR493410.1 Populus tomentosa genotype 27 Wuschela gene, complete cds.
GenBankKR4934118e-93KR493411.1 Populus tomentosa genotype 28 Wuschela gene, complete cds.
GenBankKR4934128e-93KR493412.1 Populus tomentosa genotype 29 Wuschela gene, complete cds.
GenBankKR4934138e-93KR493413.1 Populus tomentosa genotype 30 Wuschela gene, complete cds.
GenBankKR4934148e-93KR493414.1 Populus tomentosa genotype 31 Wuschela gene, complete cds.
GenBankKR4934158e-93KR493415.1 Populus tomentosa genotype 32 Wuschela gene, complete cds.
GenBankKR4934168e-93KR493416.1 Populus tomentosa genotype 33 Wuschela gene, complete cds.
GenBankKR4934178e-93KR493417.1 Populus tomentosa genotype 34 Wuschela gene, complete cds.
GenBankKR4934188e-93KR493418.1 Populus tomentosa genotype 35 Wuschela gene, complete cds.
GenBankKR4934198e-93KR493419.1 Populus tomentosa genotype 36 Wuschela gene, complete cds.
GenBankKR4934208e-93KR493420.1 Populus tomentosa genotype 37 Wuschela gene, complete cds.
GenBankKR4934218e-93KR493421.1 Populus tomentosa genotype 38 Wuschela gene, complete cds.
GenBankKR4934228e-93KR493422.1 Populus tomentosa genotype 39 Wuschela gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607970.10.0protein WUSCHEL-like
SwissprotQ8LL113e-87WUS_PETHY; Protein WUSCHEL
TrEMBLA0A2C9WN570.0A0A2C9WN57_MANES; Uncharacterized protein
STRINGcassava4.1_028209m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-43WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]