PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G134900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 606aa    MW: 66240.8 Da    PI: 4.6972
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G134900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.38.3e-1122386052374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           ++LlecA   ++++  +a + L +++e +s++gdp++R+a+yfteAL +r++    +  k+l+  et+    +e + ++k++++++P+ 
  Manes.01G134900.1.p 238 LKALLECAIL-AESEPDKAVKSLIKMRESVSEQGDPTERVAFYFTEALYSRVSL---QAEKSLTIVETT---CEEFTLSYKTLNDACPYS 320
                          689*****85.55678888889999****************************9...788888898888...999*************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          kf+hltaNqaIlea+e++ ++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p  g   + +l +tg+rL++fA+ l+++fef
  Manes.01G134900.1.p 321 KFAHLTANQAILEATESAGKIHIVDFGIVQGVQWAALLQALATRSTGKPaRIRISGIPAPVLGksPAASLFATGNRLRDFAKLLDLNFEF 410
                          *********************************************66555*********9988889999********************* PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ + + +++l+ +++rv+p+E+laVn++lql++ll+e+    +   + L++ ksl+P++v++ e ea++n+  +++rf +al+y+s++f
  Manes.01G134900.1.p 411 EP-ILNPIQELNESSFRVDPDEVLAVNFMLQLYNLLAETPVAVE---TALRMAKSLNPRIVTLGEYEASLNQIGYVNRFKNALRYFSSVF 496
                          **.7********************************88877777...9****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          +sle +l+r+s er  vE+ llgr+i  v+  e+a  rrer e +e+Wr  +e++GF++v+ls++a++qak ll +++ s  y++ e++ 
  Manes.01G134900.1.p 497 ESLEPNLSRDSPERLQVEKLLLGRRIAGVIGPEEAGsRRERIEDKEQWRVLMESCGFESVALSHYAMSQAKILLWNYNySSLYSLIESQP 586
                          *******************************999877*****************************************9999**999998 PP

                 GRAS 357 slv.lgWkdrpLvsvSaWr 374
                           ++ l Wk+ pL++vS+Wr
  Manes.01G134900.1.p 587 GFLsLAWKEVPLLTVSSWR 605
                          8888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.395211583IPR005202Transcription factor GRAS
PfamPF035142.9E-109238605IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ HHHQQQQLLG INSFPLNPWP PAMSTNPNIG  60
FSGISGAAFA DPFQVPSGGD TGEAGFQFPQ MDHHSGFRFS DFCAGAAAAA EFDSDEWMDS  120
LMGGGDSTDS SNLPSGCDAW QNNADFGLYG PDPFATCQTR LSVACSSPSD LNRVIFTETQ  180
KSPNPLQVPA WAPSPPPPPP QAVVKDAKPA NPPSPSTTKN DAVGLSSSSP EIESPALLKA  240
LLECAILAES EPDKAVKSLI KMRESVSEQG DPTERVAFYF TEALYSRVSL QAEKSLTIVE  300
TTCEEFTLSY KTLNDACPYS KFAHLTANQA ILEATESAGK IHIVDFGIVQ GVQWAALLQA  360
LATRSTGKPA RIRISGIPAP VLGKSPAASL FATGNRLRDF AKLLDLNFEF EPILNPIQEL  420
NESSFRVDPD EVLAVNFMLQ LYNLLAETPV AVETALRMAK SLNPRIVTLG EYEASLNQIG  480
YVNRFKNALR YFSSVFESLE PNLSRDSPER LQVEKLLLGR RIAGVIGPEE AGSRRERIED  540
KEQWRVLMES CGFESVALSH YAMSQAKILL WNYNYSSLYS LIESQPGFLS LAWKEVPLLT  600
VSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1532346051375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G134900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593977.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2C9WN530.0A0A2C9WN53_MANES; Uncharacterized protein
STRINGcassava4.1_003952m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein