PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G123100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 497aa MW: 54746.5 Da PI: 7.1788

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G123100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E++++++a k++G W++I +++g ++t+ q++s+ qk+ Manes.01G123100.1.p 70 RERWTEDEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 114 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-16	64	118	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.885	65	119	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.0E-17	68	117	IPR006447	Myb domain, plants
SMART	SM00717	7.1E-13	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-13	70	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-9	70	110	IPR009057	Homeodomain-like
CDD	cd00167	5.63E-10	72	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MVGGLVVSAA MAVQDQYGGT PPSTAHPAGN GISVNAGLHA IMGSQVREQF TSGNDYAPKV 60 RKPYTITKQR ERWTEDEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR 120 EASGNTTSSV EPIEIPPPRP KRKPMHPYPR KLVHPLNKEP SIPEQPLRSS SPNFSISEQE 180 NQSPTSVLSA FGSDALGSID SNSPNRSLSP VSCAGGSHPA DFTICEPNLG TEDHGSPVTI 240 TAAALNEQFP QAQKLDLFPR EEDVFYEEGL VEETSTRSLK LFGRTVLVTE CQSYRPSSPT 300 MENSKVLPLL DTNEGKPILP WNFMATELPH ENRECTLSPL SHGPAGTLYC LQFQKDNSNS 360 LEATPSLPLL AFCGGMPFPL VPFHKQDPVK VHLDSNGEER RGKYIYKEGS GSNSGSVNDG 420 GSLDKNIDGE TQSRQHCYGE KELYPIPELK LSDKSASTNR CMKGFVPYRK RTAERGSQSS 480 TITVEEREEQ RIRLCL*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MVGGLVVSAA MAVQDQYGGT PPSTAHPAGN GISVNAGLHA IMGSQVREQF TSGNDYAPKV  60
RKPYTITKQR ERWTEDEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR  120
EASGNTTSSV EPIEIPPPRP KRKPMHPYPR KLVHPLNKEP SIPEQPLRSS SPNFSISEQE  180
NQSPTSVLSA FGSDALGSID SNSPNRSLSP VSCAGGSHPA DFTICEPNLG TEDHGSPVTI  240
TAAALNEQFP QAQKLDLFPR EEDVFYEEGL VEETSTRSLK LFGRTVLVTE CQSYRPSSPT  300
MENSKVLPLL DTNEGKPILP WNFMATELPH ENRECTLSPL SHGPAGTLYC LQFQKDNSNS  360
LEATPSLPLL AFCGGMPFPL VPFHKQDPVK VHLDSNGEER RGKYIYKEGS GSNSGSVNDG  420
GSLDKNIDGE TQSRQHCYGE KELYPIPELK LSDKSASTNR CMKGFVPYRK RTAERGSQSS  480
TITVEEREEQ RIRLCL*

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G123100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592491.1	0.0	protein REVEILLE 1-like
Swissprot	F4KGY6	1e-69	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A2C9WK06	0.0	A0A2C9WK06_MANES; Uncharacterized protein
STRING	cassava4.1_006216m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-68	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Manes.01G123100.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]