PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G093200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 350aa    MW: 39518.5 Da    PI: 6.7615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G093200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.11.2e-55171431129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk
  Manes.01G093200.1.p  17 LPPGFRFHPTDEELITHYLSQKVLDNCFCA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDK 105
                          79************************9988.89***************888999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++  ++lvg+kktLvfykgrap+g+k++Wvmheyrle
  Manes.01G093200.1.p 106 EIYR-AKTLVGMKKTLVFYKGRAPRGTKSNWVMHEYRLE 143
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6313167IPR003441NAC domain
PROSITE profilePS5100559.06317167IPR003441NAC domain
PfamPF023651.3E-2918142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MENNSILSWD DDEQMELPPG FRFHPTDEEL ITHYLSQKVL DNCFCARAIG EVDLNKCEPW  60
DLPWRAKMGE KEWYFFCVRD RKYPTGLRTN RATDAGYWKA TGKDKEIYRA KTLVGMKKTL  120
VFYKGRAPRG TKSNWVMHEY RLEGKYSAYN LPKTAKNEWV ICRVFQKSSG GKKIHISGLG  180
RVSSCGNELR PPALLPPLMD SSPHNSETRN SSGDASYVTC FSKPMEPKED MVDSFNNSSS  240
SNISPTSVLI SKTSVPSSFY SSEISPNFAN FQYPACVFTP EQSISRMFLE NQGPNMKQNS  300
KMELSQDTGL NSDISSVVIN PELIHRSFED QEAPSSCAGP ADFDCLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-541417314171NO APICAL MERISTEM PROTEIN
1ut4_B1e-541417314171NO APICAL MERISTEM PROTEIN
1ut7_A1e-541417314171NO APICAL MERISTEM PROTEIN
1ut7_B1e-541417314171NO APICAL MERISTEM PROTEIN
3swm_A1e-541417317174NAC domain-containing protein 19
3swm_B1e-541417317174NAC domain-containing protein 19
3swm_C1e-541417317174NAC domain-containing protein 19
3swm_D1e-541417317174NAC domain-containing protein 19
3swp_A1e-541417317174NAC domain-containing protein 19
3swp_B1e-541417317174NAC domain-containing protein 19
3swp_C1e-541417317174NAC domain-containing protein 19
3swp_D1e-541417317174NAC domain-containing protein 19
4dul_A1e-541417314171NAC domain-containing protein 19
4dul_B1e-541417314171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G093200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051560.0KR605156.1 Manihot esculenta NAC transcription factors 18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617314.10.0NAC domain-containing protein 79-like
SwissprotQ9FLR31e-136NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A0M5JKF80.0A0A0M5JKF8_MANES; NAC transcription factors 18
STRINGcassava4.1_010869m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-134NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  5. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]