PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G081000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 324aa    MW: 36285.6 Da    PI: 6.8615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G081000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065223244223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C++C+k F+++  L  H r +
  Manes.01G081000.1.p 223 RCEKCKKLFRSSQALGAHKRIC 244
                          8******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-6327IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658431IPR007087Zinc finger, C2H2
SMARTSM003550.1426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM0035560222242IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-4223242IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-5223283No hitNo description
PfamPF139121.4E-10261283IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494261283IPR007087Zinc finger, C2H2
SMARTSM003550.85261283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MERHKCKLCA RTFANGRALG GHMKAHLATL PLPPKATMAP QQQPGDRTES ASSSYSFSGE  60
EQEQEIKNRE VEEKALIYGL RENPKKSFRF ADPEFSFAVD AGSVVQDRES ETESRNPTRR  120
RSKRTRKSGF PENQKQNFDV KKLKLKNPSS EESPAEPEPV SSVSDTSPEE DVARCLMMLS  180
RDVWTRNNEE KDQEQDIDGE KSIGMMLEEH EDIKTSKIRG KLRCEKCKKL FRSSQALGAH  240
KRICSLNGTE LRNNEGNDKI FECPYCFKLF GSGQALGGHK RSHLMATSIT NAVENSAKLD  300
NNLIDLNLPA PTEDDEFSVV SDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118143RRRSKRTRKSGFPENQKQNFDVKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G081000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621653.10.0zinc finger protein ZAT4-like
TrEMBLA0A2C9WK620.0A0A2C9WK62_MANES; Uncharacterized protein
STRINGcassava4.1_034175m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-42C2H2-like zinc finger protein