PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G070800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GRF | ||||||||
Protein Properties | Length: 219aa MW: 23968.1 Da PI: 8.9472 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.6 | 1.4e-25 | 143 | 187 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +aepgrCrRtDGKkWRCs+++l+++k+C+rH+hrgr+rsrk +e+ Manes.01G070800.1.p 143 EAEPGRCRRTDGKKWRCSKEALPDQKYCDRHMHRGRHRSRKLVEP 187 58****************************************997 PP | |||||||
2 | QLQ | 38.2 | 4.3e-14 | 72 | 106 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Ql++L Q l+yKyL ++ PvP +Ll++i+k Manes.01G070800.1.p 72 FTILQLHELQLQSLIYKYLESGFPVPYHLLLPIWK 106 7888******************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.0E-4 | 70 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.333 | 71 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.5E-10 | 72 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.532 | 143 | 187 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.5E-21 | 144 | 186 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MREMESQTPP SKIARLASGV GQTGCLNMER HGSSEGSTTG SPPIALGLAL GLDGSSDHRP 60 TPIPGCSKPY GFTILQLHEL QLQSLIYKYL ESGFPVPYHL LLPIWKSVSS SLNSVNDSSL 120 YQLYPSFMGG SFSLHADYRN VMEAEPGRCR RTDGKKWRCS KEALPDQKYC DRHMHRGRHR 180 SRKLVEPSSS QPISATTNLS ISLPISNDPS NGEVGLRP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G070800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628918.1 | 1e-160 | growth-regulating factor 10-like | ||||
Swissprot | Q6AWX7 | 1e-38 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A2C9WIL4 | 1e-159 | A0A2C9WIL4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027844m | 1e-146 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 4e-32 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G070800.1.p |
Publications ? help Back to Top | |||
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