PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G054300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 471aa    MW: 52792.6 Da    PI: 6.3657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G054300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13300345454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Manes.01G054300.1.p 300 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVTYIKEL 345
                          799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4424205IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.43E-15295349No hitNo description
SuperFamilySSF474592.75E-18295360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.415296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17300364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-17302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEEIASPSSS SSFMSFYQDS SPPLQQRLQF ILQSRPEWWV YAILWQVSKD VTGRLVLSWA  60
DGHFRGAKEF AAKACNKQNQ PKFGFNLERK MINKESQTPF SDDMDMDRFA DVDVIDYEWF  120
YTVSVTRSFH VEDGILGSTF GSGAFIWLTG SHELQMYECE RVKEARMHGL QTLACISTSC  180
GVIELGSSIT IDRDWSLVQL CKSLFGGETA CFVSKDLSHE SQLHIPNTSF LDISVFSASQ  240
KETSTEKQNE AAKKKDATGQ GRSSSDSARS DSDGNFAAGN TDRFKKRGRK QLNGKELPLN  300
HVEAERQRRE RLNHRFYALR SVVPNVSKMD KASLLADAVT YIKELKAKVD ELESKLLAVS  360
NKTQSTNVTD NQSTDSMIDH LGSSSMYKAK AVELEVKIVG SEAMIRFLSP DVNDPAARLM  420
DVLREVEFKV YHASMSSIKE MVLQDVVARV PDGLTNEEVV RSAILQRMQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-28182053192Transcription factor MYC3
4rqw_B1e-28182053192Transcription factor MYC3
4rs9_A1e-28182053192Transcription factor MYC3
4yz6_A1e-28182053192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G054300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3473380.0HM347338.1 Hevea brasiliensis lMYC3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629895.10.0transcription factor MYC2-like
TrEMBLA0A2C9WJH00.0A0A2C9WJH0_MANES; Uncharacterized protein
STRINGcassava4.1_006945m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-63bHLH family protein