PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G036500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Dof | ||||||||
Protein Properties | Length: 259aa MW: 29161.6 Da PI: 9.1128 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.4e-40 | 33 | 93 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s Manes.01G036500.1.p 33 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPS 93 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 26 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.4E-34 | 34 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDTSQFPQVI GLVKAMEASR SATLERKLVR PQKDQALNCP RCNSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RPSSSKNLPD LTNPQPSDQN PKIYQARDLN 120 LAYPPPNEDY GKTQNLKPSN LSSSSTPHHH HHMAAMELLK TGMSPRGLDS FMCMPVADSN 180 PVYSSGFSLQ EFKPTVNFFL QGFENSNGYE SIHGVQENGA KLLFPMEELK PVQANTDQYD 240 QNRRQGDHTT TGFWNGMY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G036500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619752.1 | 0.0 | dof zinc finger protein DOF3.7-like | ||||
Refseq | XP_021619760.1 | 0.0 | dof zinc finger protein DOF3.7-like | ||||
TrEMBL | A0A2C9WHJ3 | 0.0 | A0A2C9WHJ3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014301m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 3e-42 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G036500.1.p |