PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G007600.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 738aa    MW: 79763.7 Da    PI: 6.3365
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G007600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32314371260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers+ +++++ei+Y+g Hnh+k
  Manes.01G007600.2.p 314 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSH-EGHITEIIYKGAHNHPK 371
                          7****************************************.***************85 PP
2WRKY102.82e-32527585159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Manes.01G007600.2.p 527 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 585
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-28311372IPR003657WRKY domain
SuperFamilySSF1182901.83E-25312372IPR003657WRKY domain
SMARTSM007742.2E-36313371IPR003657WRKY domain
PROSITE profilePS5081123.307314372IPR003657WRKY domain
PfamPF031061.4E-24314370IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-37512587IPR003657WRKY domain
SuperFamilySSF1182901.96E-28519587IPR003657WRKY domain
PROSITE profilePS5081138.32522587IPR003657WRKY domain
SMARTSM007741.9E-37527586IPR003657WRKY domain
PfamPF031067.6E-25528585IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MAGVDDNVAI IGDWVPPSPS PRAFFSAIVG DGISSRTIPE PSRENRIEGL FPGSQEQMTT  60
GNTDEKDAKQ TGGSHFTELA PFSEQKSSSR GGLVERMAAR AGFNAPRLNT ESIRSADLSL  120
NPEIRSPYLT IPPGLSPTTL LDSPVFLSNS LAQPSPTTGK FSFVTNGNSK NSTVVSESVD  180
KGKDNFFEDF NASSFAFKPV PDSGSSFFLG ATSKQSFPGI EVSVHSENSL QSQSVEPTKV  240
QSQNRNTLHF PVDFSRSATE KDNGVNNVMT ETRAFDTVGG STEHSPCPDE QQDEGDQRAS  300
GDSIAGGGSG TPSEDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCLVKKKV ERSHEGHITE  360
IIYKGAHNHP KPPPNRRAAI GSSNPLLDVQ LDVPDQTGLQ SGTDNDPVWA NTQKGTAAGT  420
PDWRHDNIEV TSASIGPEFG NPSSSVQAQN GNHFESGDAV DASFTFSNDE DEDDRATHGS  480
VGYDGEGDET ESKRRKIETY PTDMGGATRA IREPRVVVQT TSEVDILDDG YRWRKYGQKV  540
VKGNPNPRSY YKCTNAGCTV RKHVERASHD LKSVITTYEG KHNHDVPAAR NSGHVNSVAS  600
STGPGQAGTA LQTNIHRPEP SQVHNSMARF ERSATYGSFS LPVRQQLGPT ASFSFGMNQP  660
GLANLAMAGL GPGHQPKMHI MPVHPYLAQQ RPMSEMGFML PKGEPKVEPM AEPSLNLSNN  720
PSVYQQIMSR LPLGPHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36314588878Probable WRKY transcription factor 4
2lex_A2e-36314588878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G007600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276390.0KT827639.1 Manihot esculenta WRKY transcription factor 64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632587.10.0probable WRKY transcription factor 2
RefseqXP_021632594.10.0probable WRKY transcription factor 2
RefseqXP_021632602.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A140H8R80.0A0A140H8R8_MANES; WRKY transcription factor 64
STRINGcassava4.1_002389m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]