PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000950387
Common NameSPMdDELLA2b
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 331aa    MW: 36591.2 Da    PI: 5.5891
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000950387genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.89.5e-128132438374
           GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                    m+++a+yf+eALa+r++r    +y    p++  +++ s+ l +   f+e++P+lkf+h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa
  MDP0000950387   1 MRKVATYFAEALARRIYR----IY----PQDCLDSSYSDILEM--HFYETCPYLKFAHFTANQAILEAFATASRVHVIDFGLKQGMQWPALMQALA 86 
                    79****************....44....444443335555544..5************************************************** PP

           GRAS 134 sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdev 227
                     Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l+dl++++L+++p  gE++aVn+v++lhr l++++++++    v
  MDP0000950387  87 LRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVASSLADLTPSMLDIRPseGEVVAVNSVFELHRXLARPGAVDK----V 178
                    *****************************************************************99****************99999988....* PP

           GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                    L+ +k ++Pk+v++veqea+hn++ Fl+rf+eal+yys lfdsle +  +  +++ ++++++lgr+i+nv ace  +r+erhetl++Wr+r+++aG
  MDP0000950387 179 LSSIKAMKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGS--SGPSQDLVMSEVYLGRQICNVMACEXGDRVERHETLSQWRSRMDSAG 272
                    ********************************************999..566999***************************************** PP

           GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    F pv+l+++a kqa++ll+ ++ +dgyrvee++gsl+lgW++rpL+++SaW+
  MDP0000950387 273 FDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGSLMLGWHTRPLIATSAWQ 324
                    ***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.3E-1251324IPR005202Transcription factor GRAS
PROSITE profilePS5098563.211303IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRKVATYFAE ALARRIYRIY PQDCLDSSYS DILEMHFYET CPYLKFAHFT ANQAILEAFA  60
TASRVHVIDF GLKQGMQWPA LMQALALRPG GPPAFRLTGI GPPQPDNTDA LQQVGWKLAQ  120
LAETIGVEFE FRGFVASSLA DLTPSMLDIR PSEGEVVAVN SVFELHRXLA RPGAVDKVLS  180
SIKAMKPKIV TIVEQEANHN GPVFLDRFTE ALHYYSNLFD SLEGSSGPSQ DLVMSEVYLG  240
RQICNVMACE XGDRVERHET LSQWRSRMDS AGFDPVHLGS NAFKQASMLL ALFAGGDGYR  300
VEENNGSLML GWHTRPLIAT SAWQLASATE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-63232357378Protein SCARECROW
5b3h_A5e-63232356377Protein SCARECROW
5b3h_D5e-63232356377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138160.0bud| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269|PubMed:15347801}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0078840.0DQ007884.1 Malus x domestica DELLA protein (RGL2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315670.10.0DELLA protein GAI-like
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLH2EII90.0H2EII9_MALDO; Spur-type DELLA protein
STRINGXP_008343058.10.0(Malus domestica)
STRINGXP_008362563.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]