PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000926466
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 536aa    MW: 60309.1 Da    PI: 4.4265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000926466genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.38.3e-431655322374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL ++ ea++ g+ el + ++  l e ++p g++++Rla+y+ ++     ++      + l+  ++   + ++  aa++lf++++P+ +f+h +
  MDP0000926466 165 RHLLKAFGEAMEMGQRELEEVIMRCLAEKVNPLGQSLERLAFYLCQGVVDNQQG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRFAHYA 249
                    7999999****************************************9988887......2222..22...356777899**************** PP

           GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl.vakr 185
                    aN aIleav ++  +vH++ fdi++G+Q   L+++ a+R++    l +T+++   ++       + + +et+++L++ A+++gv+++ + + +++ 
  MDP0000926466 250 ANTAILEAVPEDvXTVHVVEFDIGEGVQXSQLIESVAKRNKT---LEVTAIKWDVEEsdeaapPQWRFKETKRQLQHHARSFGVNLKVEEIaIEDL 342
                    *********9998**************************765...9999998755555678899999**********************9933335 PP

           GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleak 274
                    +++++  + r  ++E la n+++ l ++   +  ++    e+L+l k+l ++    ++++ + +  +++ n++sF   f   + +y al++sle++
  MDP0000926466 343 VSEIKKANKRGGRREFLAFNSMVGLPHMR--RRRSRGLLVEFLRLAKDLLANsargIITFGDGDacVKRgNDSSFNSSFDANVVHYKALLESLESS 436
                    5666666666667**************97..3444445789********87655669******9665668************************** PP

           GRAS 275 lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLv 368
                    +p++  e+ri++E +++++ +++    e+ +   +  +l+ W      +G++  ++s ++ ++ak ++   +s g rv  e+ ++++l W++ pLv
  MDP0000926466 437 FPTHLgEARIVMELMFVAPYVSSHAWFEKWNEAREGGNLQPW------FGLEGRRVSREMLMEAKEIVGADSSYGVRVGgENGNEMTLEWNSTPLV 526
                    *999889************************88888899999......8*****************************967778888********* PP

           GRAS 369 svSaWr 374
                     v  W+
  MDP0000926466 527 RVETWT 532
                    **9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.736138511IPR005202Transcription factor GRAS
PfamPF035142.9E-40165532IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MMQSDMNFQT LWPYLNVTNS ALDTNEYTEQ MGSSEFSSIF MASDEFSETS FPFSTMFSGE  60
FKQLADCDNL LQVTSMAVEE FPIELGGFET NYLIGEIENM YASCLEGSEG SNTLPSQQFS  120
GEGNDVWSPN SFATSEASSV DVTSVQQSIT LPRDEMEIDN EVSIRHLLKA FGEAMEMGQR  180
ELEEVIMRCL AEKVNPLGQS LERLAFYLCQ GVVDNQQGDY LKQESCKNFE AAFNLFYQIF  240
PFGRFAHYAA NTAILEAVPE DVXTVHVVEF DIGEGVQXSQ LIESVAKRNK TLEVTAIKWD  300
VEESDEAAPP QWRFKETKRQ LQHHARSFGV NLKVEEIAIE DLVSEIKKAN KRGGRREFLA  360
FNSMVGLPHM RRRRSRGLLV EFLRLAKDLL ANSARGIITF GDGDACVKRG NDSSFNSSFD  420
ANVVHYKALL ESLESSFPTH LGEARIVMEL MFVAPYVSSH AWFEKWNEAR EGGNLQPWFG  480
LEGRRVSREM LMEAKEIVGA DSSYGVRVGG ENGNEMTLEW NSTPLVRVET WTNRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1319853137374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.45017e-70fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366906.20.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A498IE330.0A0A498IE33_MALDO; Uncharacterized protein
STRINGXP_008366906.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.18e-15GRAS family protein