PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000909869
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 349aa    MW: 37694.6 Da    PI: 7.2354
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000909869genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31170228259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp+++++tY+ eHnh+
  MDP0000909869 170 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNKSDPNIFIVTYTAEHNHP 228
                    79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-31160230IPR003657WRKY domain
PROSITE profilePS5081134.521164230IPR003657WRKY domain
SuperFamilySSF1182903.27E-26167230IPR003657WRKY domain
SMARTSM007741.2E-36169229IPR003657WRKY domain
PfamPF031064.3E-26171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEDDWDLQAV VRGCFTATTT SNTTTTSTRA SSAAATTSLN ISGFHSNPAA ASFSSFDQTS  60
QQQQLLFSLP LPDPIIKPRS AIEELHDLCR PFYPKSQPPL SSPQITPXTL SPLASLSSLT  120
TPEDQTHPIQ YHRQQQTQHS KPSSSTTARS KKRKNQLKKV CQVPAEGLSS DIWAWRKYGQ  180
KPIKGSPYPR GYYRCSSSKG CMARKQVERN KSDPNIFIVT YTAEHNHPAP THRNSLAGST  240
RQKPLSPQTT TGGDSAKPTS PTTSASVDEE PIIAARSTTV ESSCKEEKGS PLITDEEDEL  300
LGMCGSVVSD DFFVGLDGLA EDYFSDHSPV SFGMPWISSS AATAAGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-23154231280Disease resistance protein RRS1
5w3x_D3e-23154231280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155ARSKKRKNQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.293976e-97fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347124.20.0WRKY transcription factor 22-like
TrEMBLA0A498JIN80.0A0A498JIN8_MALDO; Uncharacterized protein
STRINGXP_008347124.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-64WRKY family protein