PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000907929 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 31107.9 Da PI: 5.4251 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 129 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ng +r++lg++ tae+Aa a+++a+ k++g MDP0000907929 129 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEGAALAYDQAAFKMRG 179 69*******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.69E-31 | 128 | 189 | No hit | No description |
Pfam | PF00847 | 3.4E-14 | 129 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-22 | 129 | 188 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-32 | 129 | 188 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-39 | 129 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.749 | 129 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-13 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-13 | 169 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MYQDICLEFD FAXLESIRQH LLDDDFDTTF QESSPTASDS PXPMYSRSLS FSTLFSTESW 60 RDMPFKVELE DTNEVVGALS NGTDGWSSSS DHHHVDVIDT TPVKPEPQKV VREEIVAARE 120 THTPPSRQHF RGVRRRPWGK YAAEIRDPKK NGARVWLGTY ETAEGAALAY DQAAFKMRGS 180 KAKLNFPHLI GSEGYEPVRV TXKRRAPEFS TSSSSSESRS PKPKRRNTGL CLVVEAESGS 240 TSRVEMVEMS QLAAVDQWLS DLNTTVSSMP NELLISGL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-30 | 128 | 187 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-30 | 128 | 192 | 4 | 68 | ATERF1 |
3gcc_A | 3e-30 | 128 | 192 | 4 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.27028 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Weakly expressed in roots. {ECO:0000269|PubMed:10945353}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00311 | DAP | Transfer from AT2G44840 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU732455 | 0.0 | GU732455.1 Malus x domestica AP2 domain class transcription factor (AP2D31) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008376227.2 | 0.0 | ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q9LW50 | 3e-51 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A498JI66 | 0.0 | A0A498JI66_MALDO; Uncharacterized protein | ||||
STRING | XP_008376227.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-44 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000907929 |