PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000899251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 57aa MW: 6273.32 Da PI: 10.8185 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.8e-14 | 14 | 56 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 rg+WT+ Ed+ll+++ + +G g+W++ ++ g+ R++k+c++r MDP0000899251 14 RGSWTAREDKLLIQYMNSHGEGRWSSLPKNAGLLRCGKSCRLR 56 89******************************99*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-16 | 5 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.01E-11 | 8 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.511 | 9 | 56 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-12 | 14 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-8 | 16 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGSWTAR EDKLLIQYMN SHGEGRWSSL PKNAGLLRCG KSCRLR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018500216.1 | 7e-32 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | P27898 | 8e-24 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A251P7N1 | 2e-27 | A0A251P7N1_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A2P5FHK8 | 4e-27 | A0A2P5FHK8_TREOI; MYB transcription factor | ||||
TrEMBL | M5WPN0 | 1e-27 | M5WPN0_PRUPE; Uncharacterized protein | ||||
STRING | XP_009359589.1 | 8e-32 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 2e-25 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000899251 |