PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000890854
Common NameAP2D20
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 283aa    MW: 32213.3 Da    PI: 5.1875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000890854genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-19107157155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++y+GVr+++ +g+W+AeIrdp+    r  r++lg+f taeeA  a+++a+ +++g
  MDP0000890854 107 KKYRGVRQRP-WGKWAAEIRDPK----RgVRVWLGTFETAEEAGMAYDKAAIAFKG 157
                    59********.**********83....46**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-32107164No hitNo description
Gene3DG3DSA:3.30.730.103.2E-30108164IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-21108164IPR016177DNA-binding domain
PROSITE profilePS5103223.169108165IPR001471AP2/ERF domain
PfamPF008471.8E-12108157IPR001471AP2/ERF domain
SMARTSM003801.3E-35108171IPR001471AP2/ERF domain
PRINTSPR003673.3E-11109120IPR001471AP2/ERF domain
PRINTSPR003673.3E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDRPKQHTQR RTVKNKLVKK LTTRFRESTA GAPQIVRISV TDDNATDSSS DEAEAEPGRK  60
YRVLXKRVIN EVRIEDPSPS QALVSKPTKP SRCRAAEESN EISPNGKKYR GVRQRPWGKW  120
AAEIRDPKRG VRVWLGTFET AEEAGMAYDK AAIAFKGPLA LTNFLKPPEI AIPDISEEDC  180
NPISQSPLNS XCGHSVRSPT SVLSGREPEI DWKVSERQNF GVFDTEFWLN DCFEPPIFFE  240
EXRVVPETLL KDEDFSDLSL DFRTCNWDDV EDYFQDAYEL KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22106164362ATERF1
3gcc_A1e-22106164362ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.100130.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324440.0GU732444.1 Malus x domestica AP2 domain class transcription factor (AP2D20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315713.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLD5L1040.0D5L104_MALDO; AP2 domain class transcription factor
STRINGXP_008348605.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-41cytokinin response factor 4
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]