PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000883308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 540aa MW: 60551.6 Da PI: 6.3677 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00057 | 119 | 140 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F++ +L+ H+r+H MDP0000883308 119 SCYVCKKDFPSIKSLHGHMRLH 140 69******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.367 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.4 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-4 | 65 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.71 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.03E-7 | 119 | 140 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-5 | 120 | 142 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.03E-7 | 466 | 493 | No hit | No description |
SMART | SM00355 | 2.5 | 471 | 493 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.3E-5 | 471 | 493 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 473 | 493 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MKDFQEKNEH LREDHEEEEN QEIVDDDVHS QETEEQVPVS DDDEHKGKQV VLNSDVVHHR 60 SGDRVCEQCG KIFQNGKALG GHRKVHFNQS LLPKKNKALF KPKKKHVASN EGGXSSEVSC 120 YVCKKDFPSI KSLHGHMRLH RERDWKGVRP PGAVQPPSEE SKSSSYENDS SDDDNDDGDG 180 DSSFSDHTIE TDNDAAKFLV NWMKIEQRRR IANQRDPNGE DKVREFRGKK LIEESPVGYK 240 GNPSSKNMKF DGRSSKKITM EGSKSFGGTK PKKYIGLLDQ TLNQISSKPQ EFRFSRSDAT 300 MSDXNXSGFS SKYAADQVSE SASEKAIEES PRGYKGNTPL RIKLKLDGRS NKTLDKSRSS 360 RSVSFVLNKL SVGGKEKISV EEDDDDENAD QISWKVKSKK AMMKGVSKTD KKPIKDTALL 420 DQARYQIPXR TQEFGATYAE RGNYNGSSAT SNQVXERAEE AEAVEQETKQ FVCNICPCKF 480 STGQALGGHK RGHNYRMAVE NAPGKAEVAP VDEEDREISI VPEKLDLDLN QLPYESNDE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028945175.1 | 0.0 | uncharacterized protein LOC114819735 | ||||
TrEMBL | A0A498IR39 | 0.0 | A0A498IR39_MALDO; Uncharacterized protein | ||||
STRING | XP_008358936.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16199 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000883308 |