PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000880312
Common NameDREB2-3
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 420aa    MW: 47051 Da    PI: 5.3411
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000880312genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.9e-1570127152
            AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng.....krkrfslgkfgtaeeAakaaiaarkk 52 
                    + y+GVr++  +g+WvAeIr+p    +g     k+ r +lg+f ta eAa a+++a+ +
  MDP0000880312  70 CVYRGVRQRT-WGKWVAEIREPIHatGGavpkkKNNRLWLGTFPTAWEAALAYDKAAWA 127
                    68*****999.**********86686559**8555**********99*********855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-970128IPR001471AP2/ERF domain
PROSITE profilePS5103222.11571138IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1871138IPR016177DNA-binding domain
SMARTSM003803.9E-2971144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2771139IPR001471AP2/ERF domain
PRINTSPR003673.2E-97283IPR001471AP2/ERF domain
CDDcd000188.66E-2872138No hitNo description
PRINTSPR003673.2E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MASEASDGDR KLRKRRYGCD SIEDTLARWK NYNERLDFEK DGGKKTRRVP AKGSTKGCMR  60
GKGGPENSAC VYRGVRQRTW GKWVAEIREP IHATGGAVPK KKNNRLWLGT FPTAWEAALA  120
YDKAAWAIYG ASARLNFAKN TMDLKDSCSN FVSPTTTKPS SYESSSTYNS ADQAKERSGF  180
FEDCLPGEPK QEMVCAVGLV TEELELSNAT LRDGCNPSND VKFETPAMRE AVVKEFPVIL  240
ESGSQNGLDD MYNNMHNEQK NVQSDDAGMK GSITGQQLQG GLAETTKLNG HNHDGFIHTY  300
AYLDDLDDKY NNSPGYGINA SNDIGMQREL YDRLDYMHNC WSAEKTYGID AAQEQQWERM  360
MHCLPIQFQT QPQVDIPGSS NHTQDGYLDV DFDSDLVRQS YHSGVMEEQG LHYSWFPYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1572137359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815DRKLRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6698180.0JQ669818.1 Malus x domestica dehydration-responsive element-binding protein (DREB2) (DREB2-3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945534.10.0dehydration-responsive element-binding protein 2B-like
TrEMBLI1Z6750.0I1Z675_MALDO; Dehydration-responsive element-binding protein (DREB2) (Fragment)
STRINGXP_009373085.14e-96(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-41ERF family protein
Publications ? help Back to Top
  1. Zhao T,Liang D,Wang P,Liu J,Ma F
    Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress.
    Mol. Genet. Genomics, 2012. 287(5): p. 423-36
    [PMID:22526429]