PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000879675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 20647.5 Da PI: 4.2126 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.3e-09 | 4 | 25 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt++++k++w++ MDP0000879675 4 WSKIAEYLP-GRTDNEIKNYWRT 25 *********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.883 | 1 | 31 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.1E-7 | 3 | 25 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-10 | 4 | 26 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.01E-7 | 4 | 35 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.02E-7 | 4 | 25 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MLGWSKIAEY LPGRTDNEIK NYWRTRVQKQ AKQLKCDVNS KQFQDAMRYV WIPRLIERIG 60 GLPESLPDQP RTCTTTTSES EYWVDTNFVP KTSGGTSSDS YDQVQACSIP TDRTSSGDEF 120 MTYPCSGQYG SENGSGYSQN GINSDIHDFE QIDYCSTGGD TSVENLWNEE NIWFLQQQLS 180 DG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008348686.3 | 1e-128 | transcription factor MYB108-like | ||||
TrEMBL | A0A498J6E0 | 1e-128 | A0A498J6E0_MALDO; Uncharacterized protein | ||||
STRING | XP_008381542.1 | 1e-131 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25661 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 6e-34 | myb domain protein 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000879675 |