PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000868587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27710.5 Da PI: 10.4097 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.5e-19 | 24 | 74 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa a+++a+++++g MDP0000868587 24 TRFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAACAYDKAAREFRG 74 589*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.22E-29 | 24 | 82 | No hit | No description |
Pfam | PF00847 | 1.9E-12 | 24 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.13 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 25 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 25 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-37 | 25 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAPTTEKSPP KSGSEDPNPT SNETRFRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE 60 AACAYDKAAR EFRGGKAKTN FPTPTELHLD AVNIANMNNA AKLAATTNIS NSPSSHSSTV 120 ESSSPPSPRP LDLTLKTPRL STGGGYFTAA SGFRPLPASR PVIFFDAFAR ADSTATLQHA 180 RETCRFDPPA PTSGSGHSDS SSSSVVDFER TSRNGLLDLD LNLPPPLRSR LNYRRPPRKI 240 PXFXFPVQVC SFFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-20 | 26 | 82 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-20 | 26 | 82 | 6 | 63 | ATERF1 |
3gcc_A | 8e-20 | 26 | 82 | 6 | 63 | ATERF1 |
5wx9_A | 3e-19 | 21 | 87 | 10 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30266 | 0.0 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732481 | 0.0 | GU732481.1 Malus x domestica AP2 domain class transcription factor (AP2D57) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315724.1 | 1e-162 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | D5L141 | 1e-161 | D5L141_MALDO; AP2 domain class transcription factor | ||||
STRING | XP_008349999.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 1e-25 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000868587 |