PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000866809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Dof | ||||||||
Protein Properties | Length: 293aa MW: 32523 Da PI: 8.2206 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.6 | 3.6e-35 | 46 | 104 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprC+stntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGg rknk+ MDP0000866809 46 QSEPLKCPRCESTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGG-VRKNKRL 104 57889*********************************************97.5666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-22 | 48 | 103 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-31 | 49 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.906 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGLSTKQVNS DGMDWSQTSL LQAQTFQLPK PPTAMRRQQQ QNQQQQSEPL KCPRCESTNT 60 KFCYYNNYNK SQPRHFCRAC KRHWTKGGTL RNVPVGGVRK NKRLKKSSNT SPAEAAATTA 120 ANSAGIEDHH EKKTAAQALY HALISPQSLL PQQNLDNTII FSSAGLSSTT TLPFLHQSRN 180 LITFDPFSSS ISTTTSSSFD TNFSSISTSL QSLNVYNYAG AEDQFKATVE EPTITSIMPN 240 ILPQQPNWKA PSTSNAATDV YSNDWNWEDI ETLVSTDLNL PHWDDSSDHM KP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008366045.1 | 0.0 | dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A498IXX7 | 0.0 | A0A498IXX7_MALDO; Uncharacterized protein | ||||
STRING | XP_008366045.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 5e-30 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000866809 |