PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000862216
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 620aa    MW: 71199.5 Da    PI: 10.3914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000862216genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031503528123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                    ++C    C++sF +k++L  H r+ +
  MDP0000862216 503 FVCDfeGCTMSFASKHDLSXHKRNiC 528
                    899999****************9877 PP
2zf-C2H214.20.00013528550323
                    ET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                    Cp   Cgk F ++ +L++H r+H
  MDP0000862216 528 CPvkGCGKKFFSHKYLVQHRRVH 550
                    9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035515503525IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-5503525IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0045526550IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.152526555IPR007087Zinc finger, C2H2
PROSITE patternPS000280528550IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-7528549IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.0E-10542584No hitNo description
Gene3DG3DSA:3.30.160.603.1E-6550563IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637556585IPR007087Zinc finger, C2H2
SMARTSM003550.0017556580IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280558580IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-4564578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.62E-8574608No hitNo description
Gene3DG3DSA:3.30.160.605.9E-9579609IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.7586612IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221586617IPR007087Zinc finger, C2H2
PROSITE patternPS000280588612IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAEELGISYL WNDMAFMNAA KEDETRIQLA LDSEEAIAGN GDWAVKLGIN LFYSASLSRS  60
HLYSKQMPYN SVIYKAFGRS SPASSPTRID AYGRRGXKPK KVVAGKWCGK VWMSNQVHSF  120
LVKRXPEEEV EVAEDEEEXT FRAWAMPDED HEVKSEITXK TEKTVKKYAR KRKMTADTRT  180
TKKAKCFDKE DAVSDYSVDD NSPQQQRRLP KSKQAKHXES GXTKKPKRIE TEDAVSXDSX  240
QDXDSLQQNG RFLHSEQVKY IERSDVSDDS MGVESHQQHR RTAKSKQFKP VETDVVSDDS  300
FEGSSHQPQR VLRSKTTXCT GRENLISEDV HGFSSHQQRR SISRSKQARA RFIERXDTXL  360
DETPEXNFQR HKRILRNKQT KPETRGKMRQ ETPRQVKXGT XPLVKQGTRT PRNQQTPQQT  420
KKQTPRLRNN QSEQNSFDLY AEEETEGGPS TRLRKRAPKP SKGXGTKPKE QQQTARKKAK  480
NXSAGKAQGG RNETKLKEED AEFVCDFEGC TMSFASKHDL SXHKRNICPV KGCGKKFFSH  540
KYLVQHRRVH TDDRPLRCPW KGCKMTFKWA WARTEHIRVH TGARPYVCAE PGCAQTFRFV  600
SDFSRHKRKT GHSVKKSKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-6950161921139Lysine-specific demethylase REF6
6a58_A1e-6950161921139Lysine-specific demethylase REF6
6a59_A1e-6950161921139Lysine-specific demethylase REF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.83240.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351755.20.0lysine-specific demethylase REF6-like
TrEMBLA0A498I3J30.0A0A498I3J3_MALDO; Uncharacterized protein
STRINGXP_008351755.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-66relative of early flowering 6