PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000859492
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 493aa    MW: 55464.8 Da    PI: 6.2484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000859492genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12318362554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI +L
  MDP0000859492 318 HVEAERQRREKLNHRFCALRAVVPNV-----SRMDKASLLSDAVSYIIEL 362
                    899**********************6.....4***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4425216IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.897313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17315376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-16318379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9318362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-12318366No hitNo description
SMARTSM003533.9E-14319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSLPQE NHPSLQQRLQ FILQSQPDWW SYAIFWQTSN DHLVDNGCLF  60
LTWGDGHFQR PKDASPNNHH HNPYEVLSER RKILKGIQSL INDTNNPDNH YLYNMGLNAN  120
TTNIEGFFVR SFARSFSVGE SIXTNVPXKA FSSGSLVWLT GSHELQSYVC ERAKEAQMHG  180
IQTLVCIPTP TGVLELGSSD LIRENWNLVQ QTKSLFWSDL VSDQQEPGTR SPINLINRNF  240
SFSDFDIIAG VQEEKNKKEV PLDITVMKKT CGRACPGSIP FSNLNNLNPE PSDSEFPKRT  300
PKKRGRKPGL GXDTTLDHVE AERQRREKLN HRFCALRAVV PNVSRMDKAS LLSDAVSYII  360
ELKSKVDEME SQVQRESKKV KAETVDNLDN QSSTTSVDQT RPPNSLVSGS TGLEVEVKIV  420
CSDAMIRVRS ENVNYPSARL MAALRDLDFE MYHASLSCMN ELMLQDVVVK VPDNMRSEES  480
IKAALLRILD QN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-31182162192Transcription factor MYC3
4rqw_B7e-31182162192Transcription factor MYC3
4rs9_A7e-31182162192Transcription factor MYC3
4yz6_A7e-31182162192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144550.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345582.20.0transcription factor bHLH14-like
TrEMBLA0A498KJP10.0A0A498KJP1_MALDO; Uncharacterized protein
STRINGXP_008345582.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.13e-55NACL-inducible gene 1