PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000854039
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 359aa    MW: 40210.2 Da    PI: 4.5023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000854039genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20121171155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++y+GVr+++ +g+W+AeIrdp     r +r +lg+f+taeeAa  +++a+ kl+g
  MDP0000854039 121 KKYRGVRQRP-WGKWAAEIRDPA----RrQRLWLGTFDTAEEAAMVYDNAAIKLRG 171
                    59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-34121178No hitNo description
Gene3DG3DSA:3.30.730.106.9E-31122179IPR001471AP2/ERF domain
SMARTSM003801.9E-39122185IPR001471AP2/ERF domain
PROSITE profilePS5103224.131122179IPR001471AP2/ERF domain
PfamPF008471.8E-13122171IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22122179IPR016177DNA-binding domain
PRINTSPR003676.2E-11123134IPR001471AP2/ERF domain
PRINTSPR003676.2E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MKSLDAESCI LCPIKYTEHR SRTRKVTKPR KKSTAEFNSS VIPRIVRISV TDPDATDSSS  60
DEGEEFFGRQ RVKHYINEVN IEKDFRNSLV IKNNARKRPA AEVPANRRPM KNAASPTNGG  120
KKYRGVRQRP WGKWAAEIRD PARRQRLWLG TFDTAEEAAM VYDNAAIKLR GPDALTNFVA  180
PPPKEEEKPE PLVNEPVEVE TNGTXSVSGY DSGSESHNLA SPTSVLHFRS QPIIEEVDEA  240
QRFQMFDRVD EYEDETGTNI LSDDLSDFAN YLPLDLPYFD DAFSFSASES PLFDSPLFFD  300
DDSAAAADTL PDCSVKDDFS ELFRDTFDAS LSHTASSMCQ GDDYFQDILF GSDPLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22120178362ATERF1
3gcc_A6e-22120178362ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11931RSRTRKVTKPRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380530.20.0ethylene-responsive transcription factor CRF4
TrEMBLA0A498KTK70.0A0A498KTK7_MALDO; Uncharacterized protein
STRINGXP_008380530.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-56cytokinin response factor 4