PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000825698
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 548aa    MW: 61153.6 Da    PI: 10.3982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000825698genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.11.8e-12816652110374
           GRAS  10 eavssgdlelaqalLarlselaspdgd..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                    e v+ g+l+la +l+++++ l +   +   + ++a yf  AL++r+++  ++   ++ + +    ++ e+   +++f+e++P+lkf+h+taNqaIl
  MDP0000825698 166 ESVQRGELALAGSLIENMQALMTRVNTscGIGKVAGYFIDALSRRIFS--PQ---SVGSAAG---STHENELLYHYFYEACPYLKFAHFTANQAIL 253
                    67999***************966665422799***************9..22...2222222...24555678899******************** PP

           GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                    ea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rled+++++L+v+p+
  MDP0000825698 254 EAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLEDVKPWMLQVSPK 349
                    ************************************************************************************************ PP

           GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                    Ea+aVn+++qlhrll ++ + +s+++ +L+ +++l+Pk+v+vveqeadhn++ Fl+rf+eal+yys++fdslea      + ++++ +++++rei+
  MDP0000825698 350 EAVAVNSIMQLHRLLGSDPNRNSPIEMMLSWIRNLNPKIVTVVEQEADHNKPGFLDRFTEALYYYSTMFDSLEAC---PMQPEKTLAEMYIQREIC 442
                    ************************************************************************999...567778888899****** PP

           GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    nvv+cega+r+erhe l+kWr rl++aGF+p++l+++a kqa++ll  ++ +gyrvee++g+l+lgW++rpL+++SaW+
  MDP0000825698 443 NVVCCEGAARVERHEPLSKWRTRLGQAGFSPLHLGSNAFKQASMLLTLFSAEGYRVEENQGCLTLGWHSRPLIAASAWQ 521
                    ******************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.285131501IPR005202Transcription factor GRAS
PfamPF035146.3E-126166521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MGAVRFHHLL RRQQQRELLF FFLRHQIPSR NRWLFGGCGI QGPLLRPTTR RSATRTPRNR  60
HGQLSQRPLP ARLRXRPLQP LRHRHLGRLP PLRVQPPAPS CPSHPISTSP TAPSSITPPP  120
SPGKHGPTIP PSXPPCRSRT TSSPSSPPWR KIRELGWFTC SSRAPESVQR GELALAGSLI  180
ENMQALMTRV NTSCGIGKVA GYFIDALSRR IFSPQSVGSA AGSTHENELL YHYFYEACPY  240
LKFAHFTANQ AILEAFHGHD CVHVIDFNLM HGLQWPALIQ ALALRPGGPP LLRLTGIGPP  300
SPDGRDSLRE IGLRLAELAR SVNVRFAFRG VAASRLEDVK PWMLQVSPKE AVAVNSIMQL  360
HRLLGSDPNR NSPIEMMLSW IRNLNPKIVT VVEQEADHNK PGFLDRFTEA LYYYSTMFDS  420
LEACPMQPEK TLAEMYIQRE ICNVVCCEGA ARVERHEPLS KWRTRLGQAG FSPLHLGSNA  480
FKQASMLLTL FSAEGYRVEE NQGCLTLGWH SRPLIAASAW QVMXVAEATI NHQTVGILNQ  540
NNNANHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6116652028378Protein SCARECROW
5b3h_A1e-6116652027377Protein SCARECROW
5b3h_D1e-6116652027377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137320.0bud| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0078880.0DQ007888.1 Malus x domestica DELLA protein (L3b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315676.10.0DELLA protein GAI-like
SwissprotQ8S4W71e-136GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A498KHD30.0A0A498KHD3_MALDO; Uncharacterized protein
STRINGXP_008343960.10.0(Malus domestica)
STRINGXP_008390123.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-118GRAS family protein