PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000796348
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 720aa    MW: 82047 Da    PI: 7.3155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000796348genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3833.5e-1173467172374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL++cA+av+s d++ a++lL+++++++sp+gd+++Rl +yf+ +L+arla+  + ly+ l + +t+   ++e l+a++++++ +P+  + h+ 
  MDP0000796348 346 TTLLTQCAQAVASYDQRTASELLKQIRKHSSPYGDATERLSHYFADGLEARLAGARTPLYSPLLSIQTP---VAEILKAYQMYVKYCPFKHMLHFF 438
                    689************************************************************999999...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     N++I + +e+++r+H++Df+is+G+QWp+++q L++R++gpp++R+T+++ p++g   +e++eetg+rL+k+A++++v+fe++v +a+++e+++l
  MDP0000796348 439 SNRTIIKLAEKATRLHVVDFGISYGFQWPCFIQRLSERNGGPPHIRLTAIELPQPGflPTERVEETGRRLKKYAARFNVQFEYKV-IARKWETIQL 533
                    ************************************************************************************9.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    e+L+++++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++   +  +ns+ F++rf eal+++sa+fd++ea++pre+e+r + E+
  MDP0000796348 534 EDLKIDRNELTVVNCMHRLKHIPDETVVVSSPRDIVLKLIRKINPDLFIHGVINGTYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRLMFEK 629
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++ g++i+nvvaceg er+er et+++W+ r ++aGFk+vpl++   k +k +l+ ++  d +r++e+ +++++gWk+r ++ + +W+
  MDP0000796348 630 AVYGKDIMNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLDQGLLKRVKIMLKAMDyHDDFRIDEDGEWMLQGWKGRIIFGLAFWK 717
                    *********************************************************99999*************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.823319696IPR005202Transcription factor GRAS
PfamPF035141.2E-114346717IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MVHKVAGDFV QLEDEIKTSD LPRRLRFTYV CVKYSATQKT KRFSISMKNF QFGSTQNLVN  60
GFQVNHEPTN PLFLPTTTDH PTDSGLSSSG SDGDCFDISD SRPVLKYISD ILLEEDLEDK  120
PCMLQNCLAL LAAEKSFYDV LNAKDPPSPD QPPLQVYHSF EHSDDDSSHS CHSSNDSRSA  180
RTDSVFDCSE TLLASDSISG NFGGVGEART LIPNGRYGII DVERYQSVPT GGNTLRRNFA  240
PEPENDGYIS ANRLKGKKNR QREDGDYADE GRSSKQSAAL GDDAEPQEMF DKVLLCHVNH  300
THESCIRDKP LGSEVCEKLQ PTKQSKGSKT TRSKKQNNNR EVVDLTTLLT QCAQAVASYD  360
QRTASELLKQ IRKHSSPYGD ATERLSHYFA DGLEARLAGA RTPLYSPLLS IQTPVAEILK  420
AYQMYVKYCP FKHMLHFFSN RTIIKLAEKA TRLHVVDFGI SYGFQWPCFI QRLSERNGGP  480
PHIRLTAIEL PQPGFLPTER VEETGRRLKK YAARFNVQFE YKVIARKWET IQLEDLKIDR  540
NELTVVNCMH RLKHIPDETV VVSSPRDIVL KLIRKINPDL FIHGVINGTY NSPFFVTRFK  600
EALYHFSAMF DMFEATIPRE DEQRLMFEKA VYGKDIMNVV ACEGLERVER PETYKQWQVR  660
YHRAGFKQVP LDQGLLKRVK IMLKAMDYHD DFRIDEDGEW MLQGWKGRII FGLAFWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-473277181380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.9550.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281286.10.0scarecrow-like protein 14
TrEMBLD9ZJB90.0D9ZJB9_MALDO; SCL domain class transcription factor
STRINGXP_008356991.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein