PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000796348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 720aa MW: 82047 Da PI: 7.3155 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 383 | 3.5e-117 | 346 | 717 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++lL++cA+av+s d++ a++lL+++++++sp+gd+++Rl +yf+ +L+arla+ + ly+ l + +t+ ++e l+a++++++ +P+ + h+ MDP0000796348 346 TTLLTQCAQAVASYDQRTASELLKQIRKHSSPYGDATERLSHYFADGLEARLAGARTPLYSPLLSIQTP---VAEILKAYQMYVKYCPFKHMLHFF 438 689************************************************************999999...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 N++I + +e+++r+H++Df+is+G+QWp+++q L++R++gpp++R+T+++ p++g +e++eetg+rL+k+A++++v+fe++v +a+++e+++l MDP0000796348 439 SNRTIIKLAEKATRLHVVDFGISYGFQWPCFIQRLSERNGGPPHIRLTAIELPQPGflPTERVEETGRRLKKYAARFNVQFEYKV-IARKWETIQL 533 ************************************************************************************9.7********* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 e+L+++++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++ + +ns+ F++rf eal+++sa+fd++ea++pre+e+r + E+ MDP0000796348 534 EDLKIDRNELTVVNCMHRLKHIPDETVVVSSPRDIVLKLIRKINPDLFIHGVINGTYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRLMFEK 629 ************************************************************************************************ PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ g++i+nvvaceg er+er et+++W+ r ++aGFk+vpl++ k +k +l+ ++ d +r++e+ +++++gWk+r ++ + +W+ MDP0000796348 630 AVYGKDIMNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLDQGLLKRVKIMLKAMDyHDDFRIDEDGEWMLQGWKGRIIFGLAFWK 717 *********************************************************99999*************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.823 | 319 | 696 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-114 | 346 | 717 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MVHKVAGDFV QLEDEIKTSD LPRRLRFTYV CVKYSATQKT KRFSISMKNF QFGSTQNLVN 60 GFQVNHEPTN PLFLPTTTDH PTDSGLSSSG SDGDCFDISD SRPVLKYISD ILLEEDLEDK 120 PCMLQNCLAL LAAEKSFYDV LNAKDPPSPD QPPLQVYHSF EHSDDDSSHS CHSSNDSRSA 180 RTDSVFDCSE TLLASDSISG NFGGVGEART LIPNGRYGII DVERYQSVPT GGNTLRRNFA 240 PEPENDGYIS ANRLKGKKNR QREDGDYADE GRSSKQSAAL GDDAEPQEMF DKVLLCHVNH 300 THESCIRDKP LGSEVCEKLQ PTKQSKGSKT TRSKKQNNNR EVVDLTTLLT QCAQAVASYD 360 QRTASELLKQ IRKHSSPYGD ATERLSHYFA DGLEARLAGA RTPLYSPLLS IQTPVAEILK 420 AYQMYVKYCP FKHMLHFFSN RTIIKLAEKA TRLHVVDFGI SYGFQWPCFI QRLSERNGGP 480 PHIRLTAIEL PQPGFLPTER VEETGRRLKK YAARFNVQFE YKVIARKWET IQLEDLKIDR 540 NELTVVNCMH RLKHIPDETV VVSSPRDIVL KLIRKINPDL FIHGVINGTY NSPFFVTRFK 600 EALYHFSAMF DMFEATIPRE DEQRLMFEKA VYGKDIMNVV ACEGLERVER PETYKQWQVR 660 YHRAGFKQVP LDQGLLKRVK IMLKAMDYHD DFRIDEDGEW MLQGWKGRII FGLAFWKPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-47 | 327 | 718 | 1 | 380 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.955 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001281286.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | D9ZJB9 | 0.0 | D9ZJB9_MALDO; SCL domain class transcription factor | ||||
STRING | XP_008356991.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000796348 |