PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000793261
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 293aa    MW: 31814.9 Da    PI: 4.833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000793261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-085292348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Ia++++ gRt++ +k++w+++l
    MDP0000793261  5 RWSLIAAHLP-GRTDNGIKNYWNSHL 29
                     5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.656133IPR017930Myb domain
SuperFamilySSF466892.53E-7433IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-11529IPR009057Homeodomain-like
CDDcd001674.39E-5529No hitNo description
PfamPF002492.6E-6529IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MHCCRWSLIA AHLPGRTDNG IKNYWNSHLS RKIYSFIKLG NEYLPTILND VKKITSCNKH  60
RKGTRASRST MNNKSKNKNL APFNSRKSEA NPELGNPSLP TGTIINLGQV GNEDINLRGL  120
ESWDPIKNGD GEAIGMLGMQ YSFLDGAEMI NLDPCGEQKK SAQLWLGKKE NNITGSSTAI  180
YGDNDGETEV LGTSCECVGT MDLNNNIFEI EGRRSTSIWS SSNAAESGGG GGGGGGELYS  240
FASSMNXGFD DEWLDWGWAG GGLQCHNGEL EWRDEGETIA WLWENGSTGE GQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947844.10.0transcription factor MYB111-like
TrEMBLA0A498IDK50.0A0A498IDK5_MALDO; Uncharacterized protein
STRINGXP_008353833.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-16myb domain protein 111