PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000790788
Common NameAP2D9, LOC103411651
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 242aa    MW: 26222 Da    PI: 6.556
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000790788genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-1967117155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  MDP0000790788  67 PVYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 117
                    68*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.8E-226215IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008474.2E-1367117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3268126IPR001471AP2/ERF domain
SMARTSM003803.6E-3668131IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2168126IPR016177DNA-binding domain
PROSITE profilePS5103223.57868125IPR001471AP2/ERF domain
PRINTSPR003671.3E-106980IPR001471AP2/ERF domain
CDDcd000181.03E-3269127No hitNo description
PRINTSPR003671.3E-1091107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAREPNISEA ESTSNSSSCS SGLLQTRPNS TANTLNTKTK KPSREQQQVV LKRKRDDDSN  60
NNSSKHPVYR GVRKRNWGKW VSEIREPRKK SRIWLGTFST PEMAARAHDV AALSIKGNSA  120
ILNFPELTEL LPRPASLTPQ DIQAAATKAA AMVNLNSTTS SSLSSSSSSS SVLLSQSKGS  180
DSEELGEIVE LPNIEGSFDS PESRNEFILV NDSLDGWVYP SLGLEGVELN LWGFFSSDSS  240
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2056126273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162880.0bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324330.0GU732433.1 Malus x domestica AP2 domain class transcription factor (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315712.11e-173ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD39e-61DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLD5L0Z31e-172D5L0Z3_MALDO; AP2 domain class transcription factor
STRINGXP_008348502.11e-173(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]