PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000777060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 264aa MW: 28569 Da PI: 6.4999 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.3 | 2.3e-42 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk++Gasnv k+l++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l MDP0000777060 8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVYGASNVAKILNELNVAHREDAVTSLAYEAEARLRDPVYGCVGFISILQNRLKQVQTDLYN 103 7********************************************************************************************988 PP DUF260 97 lke 99 +k+ MDP0000777060 104 AKK 106 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.709 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-42 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HKVYGASNVA KILNELNVAH 60 REDAVTSLAY EAEARLRDPV YGCVGFISIL QNRLKQVQTD LYNAKKDLSA YIGPQAMMIP 120 VFPPPQQTDM NGSVPMLGVS TGPPPQQGCG GGQLVIRDQH QQQLFEAHQQ DLVRFNINGM 180 DTAASSVTGN GFNQIPAAAA SNGVVSGSLG LGGAFDNNHY NQVQQQATAH HQNSLEYQLQ 240 AQLMLQPQPA AEQSQQKSEG EES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-47 | 7 | 111 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-47 | 7 | 111 | 10 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008371805.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 6e-69 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A498IUH3 | 1e-158 | A0A498IUH3_MALDO; Uncharacterized protein | ||||
STRING | XP_008371805.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 5e-65 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000777060 |
Publications ? help Back to Top | |||
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