PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000774186
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 251aa    MW: 27227.1 Da    PI: 6.3007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000774186genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000127496123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  MDP0000774186 74 YTCTFCRREFRSAQALGGHMNVH 96
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-671101No hitNo description
SMARTSM003550.00667496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15774101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAELGLLTRT DLQNLALSQQ NQNQTQLSNP NLVPEAWMWN PKPAQEPEDD SWEVRAFAED  60
TGNVMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQSPPQM SPAAVSSAST  120
SSFIIPTQEF VNANGGLCLV YQLPSPDSIN GASFNTATSL MSSSRTHGHG VESSSPSTLL  180
SISPNIPPHD YLVSVVPPAG RSNSNSQYCH SNKSSARDDP EPSKSGTEKG NFEELDLELR  240
LGHGRPAVPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-136996229superman protein
2l1o_A3e-136996229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952233.11e-163transcriptional regulator SUPERMAN-like
TrEMBLA0A498JV010.0A0A498JV01_MALDO; Uncharacterized protein
STRINGXP_008346496.10.0(Malus domestica)
STRINGXP_008373566.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-35C2H2 family protein