PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000771149
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 322aa    MW: 35097.4 Da    PI: 7.6637
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000771149genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222.1e-383494262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   k++al+cprC+st tkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s
  MDP0000771149 34 KDQALNCPRCNSTTTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNNKRS 94
                   7899*****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-272686IPR003851Zinc finger, Dof-type
PfamPF027011.6E-323592IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7053892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDTAHWPQGI GVVNSMEDFS STRPITERRA RPQKDQALNC PRCNSTTTKF CYYNNYSLSQ  60
PRYFCKTCRR YWTEGGSLRN VPVGGGSRKN NKRSNNSDSS SPSTSSAKKV AHDRDHHLTP  120
QSNFPSQSAS QNPNKIHFQG QDLNLAYPPA DQEHDNNNIT ELPFSMETID NRTYHHQNPS  180
SSATTTTSHH FSSAMELLKS TGIASRGLTS FVPMAAVEVP DHSSNITMFS SGFPMHEFKP  240
SGLSFSLDGF ESAGFGGCLQ GVQETTNTSH ARLLFPTAQD LKQQIPSSTT AAADFDQHNN  300
RGGEGGSGGG YWNGMLGGGS W*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.159660.0bud| cell culture| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967971e-54BT096797.1 Soybean clone JCVI-FLGm-21O11 unknown mRNA.
GenBankDQ8572711e-54DQ857271.1 Glycine max Dof21 mRNA, complete cds.
GenBankDQ8572721e-54DQ857272.1 Glycine max Dof28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343792.10.0dof zinc finger protein DOF4.6-like
TrEMBLA0A498KKI90.0A0A498KKI9_MALDO; Uncharacterized protein
STRINGXP_008343792.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.13e-43Dof family protein