PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000768445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 630aa MW: 71400.9 Da PI: 6.1223 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 275.7 | 1.5e-84 | 264 | 627 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 + Ll++Ae v +++e+a++lL r + as + +p+qR+++yf+eAL++r+ + +++++yk + s+ s s++l++ + ++ P++ + ++ MDP0000768445 264 AHILLAAAEKVGYQQFERANRLLLRCEFAASFKVNPVQRVVFYFAEALRERIEKeTGNSMYKGNEISSYSL-GLSTNLTFI-ACHQDIPFHPVLQF 357 699***************************************************77888888777777763.244444443.466778******** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 +a q Ile v+ e++vH iD++i G+QW L++ La+R+e p l iT+vg + k+++eetg+rLa++A++l+vpf+f++++++++ed++ MDP0000768445 358 AAIQVILENVALESKVHLIDLEIRSGVQWTGLMEVLAEREECPIeLLTITAVGV---TGKQKIEETGRRLASVAKALNVPFQFKAVIVTDMEDVKN 450 ****************************************7665499*******...68************************************* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 + ++v+ Ea++V l l ++ ++ +le+ +++++++l P v+vv e ea+hns+sF++rf++al yysa+fd+lea + +++e r+++Er MDP0000768445 451 QLFDVEDXEAVVVYAPLILRTMILRPRCLEN----LMRVMRNLTPCVMVVNEVEANHNSPSFVNRFIDALFYYSAFFDCLEACM-KQEESRVMMER 541 ***********************99999999....***********************************************96.66677888887 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++ i+n+va+eg+er+ r+ ++e Wr+ + ++ + ++++s+ +qa+l+ +k++s +++ ++l+ gWk+ p+ s+SaW+ MDP0000768445 542 L-LHEGIRNIVAAEGSERVTRNVKMEVWRAFFARFRMVEINFSKASLNQASLVAKKFGSPSCTLHRIGKCLIVGWKGTPIHSLSAWK 627 7.**********************************************************9*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.487 | 237 | 607 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.1E-82 | 264 | 627 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MANAFFSFTP FDFGVVGGGG GLTPQLEDYE KEDQKVVVFK GKPEHLFGME ELGLGEMEKF 60 PHLSKDQPQS KTSYSMLDNF SFDTVCSEHD LQRSNMSEKE LDHVSKDHDH RHYQQQNQHY 120 QQQSKSNYSD LDNFNFDSAF HSTQPIQDVA NQLTFGGSDI AETNKQMPHQ SSLAVLELLN 180 NYGSAFKKLK RDRFSNSCNE AGASSMSSYS IQQKLSTEEI MRVAGARYVQ FSNQGYDDFF 240 VPSHPFGYAL SGLSEEETKD VELAHILLAA AEKVGYQQFE RANRLLLRCE FAASFKVNPV 300 QRVVFYFAEA LRERIEKETG NSMYKGNEIS SYSLGLSTNL TFIACHQDIP FHPVLQFAAI 360 QVILENVALE SKVHLIDLEI RSGVQWTGLM EVLAEREECP IELLTITAVG VTGKQKIEET 420 GRRLASVAKA LNVPFQFKAV IVTDMEDVKN QLFDVEDXEA VVVYAPLILR TMILRPRCLE 480 NLMRVMRNLT PCVMVVNEVE ANHNSPSFVN RFIDALFYYS AFFDCLEACM KQEESRVMME 540 RLLHEGIRNI VAAEGSERVT RNVKMEVWRA FFARFRMVEI NFSKASLNQA SLVAKKFGSP 600 SCTLHRIGKC LIVGWKGTPI HSLSAWKFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-37 | 271 | 629 | 27 | 381 | Protein SCARECROW |
5b3h_A | 5e-37 | 271 | 629 | 26 | 380 | Protein SCARECROW |
5b3h_D | 5e-37 | 271 | 629 | 26 | 380 | Protein SCARECROW |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346627.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A498IMH3 | 0.0 | A0A498IMH3_MALDO; Histone-lysine N-methyltransferase | ||||
STRING | XP_008386716.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-51 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000768445 |